Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,819,170 T→C N93S (AAC→AGC)  chbR ← DNA‑binding transcriptional dual regulator ChbR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,819,1700TC100.0% 274.5 / NA 75N93S (AAC→AGC) chbRDNA‑binding transcriptional dual regulator ChbR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/40);  total (35/40)

TGAAGAAATCACTGTTTCCACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGTTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGT  >  NC_000913/1819043‑1819306
                                                                                                                               |                                                                                                                                        
tGAAGAAATCACTGTTTCCACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGcgcg                                                                                                                              <  1:385729/140‑1 (MQ=255)
       aTCACTGTTTCCACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGTGTTTACTGATCCCAACGCTCAATATGCGCGTGGCAcc                                                                                                                       >  2:780531/1‑140 (MQ=255)
          aCTGTTTCCACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCCCGTGGCACCaaa                                                                                                                    <  2:1100171/140‑1 (MQ=255)
                tCCACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATa                                                                                                              <  1:1046336/140‑1 (MQ=255)
                tCCACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATa                                                                                                              >  2:469125/1‑140 (MQ=255)
                tCCACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATa                                                                                                              >  2:545965/1‑140 (MQ=255)
                 ccACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATaa                                                                                                             >  1:1330101/1‑140 (MQ=255)
                  cacaTAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATaaa                                                                                                            <  1:540729/140‑1 (MQ=255)
                      tAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACt                                                                                                        >  1:1278126/1‑140 (MQ=255)
                        ggTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACttt                                                                                                      >  2:995267/1‑140 (MQ=255)
                        ggTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACttt                                                                                                      >  1:822065/1‑140 (MQ=255)
                        ggTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACttt                                                                                                      >  1:686529/1‑140 (MQ=255)
                        ggTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACttt                                                                                                      >  1:1200243/1‑140 (MQ=255)
                         gTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTg                                                                                                     >  1:1352788/1‑140 (MQ=255)
                         gTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTg                                                                                                     >  1:1089040/1‑140 (MQ=255)
                          tGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGa                                                                                                    <  2:1352788/140‑1 (MQ=255)
                          tGAGAAAAGCGTTATTGGTCCAGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGa                                                                                                    >  2:1002598/1‑140 (MQ=255)
                              aaaaGCGTTATTGGTCCGGTATACCTGCTAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGt                                                                                                <  2:828489/140‑1 (MQ=255)
                                 aGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCg                                                                                             <  1:1251218/140‑1 (MQ=255)
                                 aGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCg                                                                                             >  2:208897/1‑140 (MQ=255)
                                   cGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGAt                                                                                                   <  1:957673/132‑1 (MQ=255)
                                   cGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGAt                                                                                                   >  2:957673/1‑132 (MQ=255)
                                   cGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGaa                                                                                           >  1:903739/1‑140 (MQ=255)
                                         tGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAAc                                                                                     <  2:590620/140‑1 (MQ=255)
                                                     ccTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACa                                                                         >  1:905402/1‑140 (MQ=255)
                                                      cTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACaa                                                                        >  2:1058587/1‑140 (MQ=255)
                                                      cTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACaa                                                                        >  2:988244/1‑140 (MQ=255)
                                                        gCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACaaaa                                                                      >  1:614427/1‑140 (MQ=255)
                                                        gCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACaaaa                                                                      <  1:769658/140‑1 (MQ=255)
                                                        gCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACaaaa                                                                      >  1:48080/1‑140 (MQ=255)
                                                        gCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACaaaa                                                                      >  1:153499/1‑140 (MQ=255)
                                                         cGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAAt                                                                     <  2:650834/140‑1 (MQ=255)
                                                         cGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAAt                                                                     <  2:1085177/140‑1 (MQ=255)
                                                          gAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATc                                                                    >  1:154435/1‑140 (MQ=255)
                                                          gAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATc                                                                    >  1:1377832/1‑140 (MQ=255)
                                                           aaGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAATATCg                                                                   >  2:377704/1‑140 (MQ=255)
                                                           aaGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCg                                                                   >  1:138020/1‑140 (MQ=255)
                                                            aGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGc                                                                  <  2:272832/140‑1 (MQ=255)
                                                            aGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACCGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGc                                                                  <  1:1028589/140‑1 (MQ=255)
                                                             gCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGcc                                                                 >  2:1099724/1‑140 (MQ=255)
                                                             gCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGcc                                                                 <  2:634022/140‑1 (MQ=255)
                                                              cGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGccc                                                                <  1:1058587/140‑1 (MQ=255)
                                                              cGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGccc                                                                >  1:259027/1‑140 (MQ=255)
                                                                aCAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCg                                                              <  2:596924/140‑1 (MQ=255)
                                                                aCAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGATTACTGATCCCAACCCCCAATATGCGCGTGGCACCAAACTCATAAAAACTTTAATGGTGCGAACCTAACGGAATAAAAACCAAATCGCCCCg                                                              >  2:675479/1‑140 (MQ=255)
                                                                    aGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTcc                                                          <  2:154435/140‑1 (MQ=255)
                                                                         tAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTaa                                                     <  1:1002598/140‑1 (MQ=255)
                                                                           aGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAaca                                                   >  2:942803/1‑140 (MQ=255)
                                                                              caacaaTGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCACGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACAcgc                                                >  2:524125/1‑140 (MQ=255)
                                                                                 caaTGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTTATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCt                                             <  2:406937/140‑1 (MQ=255)
                                                                                 caaTGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAATATCGCCCCGTTCCAGTAACACGCGCt                                             <  1:377704/140‑1 (MQ=255)
                                                                                 caaTGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCt                                             <  2:1391387/140‑1 (MQ=255)
                                                                                 caaTGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCt                                             <  1:780531/140‑1 (MQ=255)
                                                                                       cAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGt                                       >  2:652008/1‑140 (MQ=255)
                                                                                       cAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGt                                       >  2:1017629/1‑140 (MQ=255)
                                                                                          gTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTaa                                    >  1:1091542/1‑140 (MQ=255)
                                                                                           tAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAAt                                   <  1:1328007/140‑1 (MQ=255)
                                                                                           tAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAAt                                   <  2:1089040/140‑1 (MQ=255)
                                                                                           tAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAAt                                   <  1:652008/140‑1 (MQ=255)
                                                                                             aTGCTGCTCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAAtct                                 >  1:923272/1‑140 (MQ=255)
                                                                                                 tgctCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTg                             <  1:890790/140‑1 (MQ=255)
                                                                                                  gctCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTgg                            <  2:686529/140‑1 (MQ=255)
                                                                                                   ctCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAAt                                   <  2:457274/132‑1 (MQ=255)
                                                                                                   ctCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAAt                                   >  1:457274/1‑132 (MQ=255)
                                                                                                    tCAAAAAAGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGaa                          >  2:694045/1‑140 (MQ=255)
                                                                                                           aGCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGc                   <  2:153499/140‑1 (MQ=255)
                                                                                                            gCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGcc                  <  1:339430/140‑1 (MQ=255)
                                                                                                            gCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGcc                  <  2:1278126/140‑1 (MQ=255)
                                                                                                            gCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGcc                  <  1:1099724/140‑1 (MQ=255)
                                                                                                            gCGTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGcc                  <  1:208897/140‑1 (MQ=255)
                                                                                                              gTTTACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCg                <  1:988244/140‑1 (MQ=255)
                                                                                                                ttACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGt              <  2:571087/140‑1 (MQ=255)
                                                                                                                 tACTGATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGtt             <  2:1091542/140‑1 (MQ=255)
                                                                                                                     gATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATa         <  2:1200243/140‑1 (MQ=255)
                                                                                                                     gATCCCAACGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATC‑CCTGGAAATAACGCCCGGTTAATAc        <  2:1377832/140‑1 (MQ=255)
                                                                                                                           aaCGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCagag   >  2:708689/1‑140 (MQ=255)
                                                                                                                            aCGCTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGt  <  2:1343283/140‑1 (MQ=255)
                                                                                                                               |                                                                                                                                        
TGAAGAAATCACTGTTTCCACATAGGTGAGAAAAGCGTTATTGGTCCGGTATACCTGCGAAGCGACAAAGCAATAAGGCAACAATGGCAGGTAATGCTGCTCAAAAAAGCGTTTACTGATCCCAACGTTCAATATGCGCGTGGCACCAAACTCATAAAAACTTTGATGGTGCGAACCTAACGGAATAAAAACAAAATCGCCCCGTTCCAGTAACACGCGCTTACCGTTAATCTCCTGGAAATAACGCCCGGTTAATACCAGAGT  >  NC_000913/1819043‑1819306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A