Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,871,269 A→G G12G (GGT→GGC)  truD ← tRNA pseudouridine(13) synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,871,2690AG100.0% 273.5 / NA 75G12G (GGT→GGC) truDtRNA pseudouridine(13) synthase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (32/43);  total (32/43)

ACAAAACGGGTATTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTACCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATC  >  NC_000913/2871132‑2871405
                                                                                                                                         |                                                                                                                                        
acaAAACGGGTATTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGcc                                                                                                                                        >  1:842628/1‑140 (MQ=255)
acaAAACGGGTATCGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCGCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGcc                                                                                                                                        >  1:882600/1‑140 (MQ=255)
  aaaaCGGGTATTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGt                                                                                                                                      <  1:12344/140‑1 (MQ=255)
  aaaaCGGGTATTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGt                                                                                                                                      <  2:332070/140‑1 (MQ=255)
  aaaaCGGGTACTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGt                                                                                                                                      <  1:967622/140‑1 (MQ=255)
     aCGGGTATTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGa                                                                                                                                   <  2:842628/140‑1 (MQ=255)
      cGGGTATTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAg                                                                                                                                  <  2:1412524/140‑1 (MQ=255)
          tATTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTaa                                                                                                                              <  2:1067785/140‑1 (MQ=255)
              gCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTga                                                                                                                          >  2:312897/1‑140 (MQ=255)
               cAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCGCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTgag                                                                                                                         <  2:882600/140‑1 (MQ=255)
                aGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTgaga                                                                                                                        <  2:832441/140‑1 (MQ=255)
                    gTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTAt                                                                                                                    >  1:85218/1‑140 (MQ=255)
                        ttGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCaaa                                                                                                                <  2:48526/140‑1 (MQ=255)
                                tCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTc                                                                                                             <  2:140225/135‑1 (MQ=255)
                                tCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTc                                                                                                             >  1:140225/1‑135 (MQ=255)
                                     ccAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTttg                                                                                                   <  2:1069421/140‑1 (MQ=255)
                                       aGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTttgtt                                                                                                 <  1:1274281/140‑1 (MQ=255)
                                        gAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTttgttg                                                                                                <  2:1350271/140‑1 (MQ=255)
                                        gAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTttgttg                                                                                                <  2:369591/140‑1 (MQ=255)
                                          atatGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGcc                                                                                              <  2:85218/140‑1 (MQ=255)
                                             tGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTa                                                                                           <  2:343995/140‑1 (MQ=255)
                                              gCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTaa                                                                                          >  1:498537/1‑140 (MQ=255)
                                                tCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATg                                                                                        <  1:312897/140‑1 (MQ=255)
                                                   ccTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTttgttg                                                                                                <  2:635205/129‑1 (MQ=255)
                                                   ccTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTttgttg                                                                                                >  1:635205/1‑129 (MQ=255)
                                                   ccTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGt                                                                                     >  2:1133024/1‑140 (MQ=255)
                                                   ccTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTCGCCTTAATGAGt                                                                                     >  2:90907/1‑140 (MQ=255)
                                                    cTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTa                                                                                    >  2:478829/1‑140 (MQ=255)
                                                      tCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCGTTTTGTTGCCTTAATGAGTAgc                                                                                  >  1:997660/1‑140 (MQ=255)
                                                       cACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAgcg                                                                                 >  2:40632/1‑140 (MQ=255)
                                                        aCCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAgcgc                                                                                <  1:40632/140‑1 (MQ=255)
                                                         ccATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGcc                                                                               >  1:404646/1‑140 (MQ=255)
                                                           aTCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCAc                                                                             <  2:950534/140‑1 (MQ=255)
                                                            tCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCAcc                                                                            <  2:1340550/140‑1 (MQ=255)
                                                            tCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCAcc                                                                            <  2:800359/140‑1 (MQ=255)
                                                            tCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAATGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCAcc                                                                            >  1:971726/1‑140 (MQ=255)
                                                              aGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGc                                                                          >  2:456490/1‑140 (MQ=255)
                                                              aGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGc                                                                          >  2:288479/1‑140 (MQ=255)
                                                                gCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCtt                                                                        >  1:450370/1‑140 (MQ=255)
                                                                gCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCtt                                                                        >  2:410844/1‑140 (MQ=255)
                                                                gCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCtt                                                                        >  2:1217648/1‑140 (MQ=255)
                                                                gCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCtt                                                                        >  2:881906/1‑140 (MQ=255)
                                                                 cTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTc                                                                       <  1:1032610/140‑1 (MQ=255)
                                                                 cTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTc                                                                       <  1:93245/140‑1 (MQ=255)
                                                                 cTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTc                                                                       >  2:208400/1‑140 (MQ=255)
                                                                  tCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTca                                                                      >  1:997970/1‑140 (MQ=255)
                                                                       gCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGc                                                                 <  1:405906/140‑1 (MQ=255)
                                                                        cccAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCa                                                                <  1:681124/140‑1 (MQ=255)
                                                                              tCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCt                                                          >  2:173400/1‑140 (MQ=255)
                                                                                  ccaccaccaCAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTccc                                                      <  2:124376/140‑1 (MQ=255)
                                                                                        ccacAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTc                                                <  2:1159600/140‑1 (MQ=255)
                                                                                           caAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCgg                                             >  1:461895/1‑140 (MQ=255)
                                                                                                tCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAAt                                        >  2:384671/1‑140 (MQ=255)
                                                                                                   tCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATccc                                     >  2:629110/1‑140 (MQ=255)
                                                                                                      ggATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGt                                  <  1:478829/140‑1 (MQ=255)
                                                                                                        aTTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGttt                                <  1:208400/140‑1 (MQ=255)
                                                                                                          tGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGttttt                              >  1:643592/1‑140 (MQ=255)
                                                                                                            gCTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTcc                            >  1:6271/1‑140 (MQ=255)
                                                                                                             cTTTCAGCAGCCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTCGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCg                           <  1:90907/140‑1 (MQ=255)
                                                                                                                    cagcCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTagtagt                    <  1:1133024/140‑1 (MQ=255)
                                                                                                                     agcCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTTACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTg                   <  1:988008/140‑1 (MQ=255)
                                                                                                                      gcCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTgg                  >  2:521985/1‑140 (MQ=255)
                                                                                                                      gcCCGGTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTgg                  >  1:219102/1‑140 (MQ=255)
                                                                                                                          ggTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCttt              <  2:219102/140‑1 (MQ=255)
                                                                                                                          ggTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCttt              <  1:629110/140‑1 (MQ=255)
                                                                                                                          ggTGCCTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCttt              <  2:997970/140‑1 (MQ=255)
                                                                                                                              ccTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCTTTCACg          <  2:461895/140‑1 (MQ=255)
                                                                                                                              ccTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCTTTCACg          <  2:6271/140‑1 (MQ=255)
                                                                                                                               cTTGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCTTTCACGt         <  2:1010987/140‑1 (MQ=255)
                                                                                                                                 tGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCttt              <  2:1383513/133‑1 (MQ=255)
                                                                                                                                 tGCGGTTTGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCttt              >  1:1383513/1‑133 (MQ=255)
                                                                                                                                      tttGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTgg                  <  2:1282036/124‑1 (MQ=255)
                                                                                                                                      tttGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCTTTCACGTTAAcatc  <  1:521985/140‑1 (MQ=255)
                                                                                                                                      tttGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCTTTCACGTTAAcatc  <  1:456490/140‑1 (MQ=255)
                                                                                                                                      tttGCCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCTTTCACGTTAAcatc  >  2:884390/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                        
ACAAAACGGGTATTGCAGCCGTTTTTGAGGATTCTAACCAGAATATGCTCACCTTCACCATCAGGCTCAAAGCCCAAATCTTCCACCACCACAAAGTCTTCCGGATTGGCTTTCAGCAGCCCGGTGCCTTGCGGTTTACCGTGGAGGTAAGTGAGATTATCAAACTCAATCATTTTGTTGCCTTAATGAGTAGCGCCACCGCTTCACAGGCAATCCCTTCCCCACGTCCGGTAAATCCCAGTTTTTCCGTAGTAGTGGCTTTCACGTTAACATC  >  NC_000913/2871132‑2871405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A