Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,066,576 T→C N200D (AAC→GAC)  ygfI ← putative LysR‑type DNA‑binding transcriptional regulator YgfI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,066,5760TC100.0% 354.4 / NA 96N200D (AAC→GAC) ygfIputative LysR‑type DNA‑binding transcriptional regulator YgfI
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (47/49);  total (47/49)

GGATCACCGTCAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTTCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAGTTCCTGAACT  >  NC_000913/3066441‑3066712
                                                                                                                                       |                                                                                                                                        
ggATCACCGTCAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGa                                                                                                                                      >  1:367017/1‑140 (MQ=255)
ggATCACCGTCAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGACTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGa                                                                                                                                      <  2:978426/140‑1 (MQ=255)
     aCCGTCAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAgcg                                                                                                                                 <  1:557822/140‑1 (MQ=255)
     aCCGTCAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAgcg                                                                                                                                 <  1:1143142/140‑1 (MQ=255)
     aCCGTCAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAgcg                                                                                                                                 <  1:851235/140‑1 (MQ=255)
       cGTCAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCa                                                                                                                               >  2:299170/1‑140 (MQ=255)
          cAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCAttt                                                                                                                            <  1:329431/140‑1 (MQ=255)
          cAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCAttt                                                                                                                            <  2:287747/140‑1 (MQ=255)
           aGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAgcg                                                                                                                                 <  2:748396/134‑1 (MQ=255)
           aGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAgcg                                                                                                                                 >  1:748396/1‑134 (MQ=255)
             aaaaTGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTa                                                                                                                         >  2:367190/1‑140 (MQ=255)
                    ccGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAggg                                                                                                                  <  1:522084/140‑1 (MQ=255)
                     cgcgCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGc                                                                                                                 <  2:428424/140‑1 (MQ=255)
                       cgcTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAg                                                                                                               <  2:1045608/140‑1 (MQ=255)
                       cgcTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAg                                                                                                               >  2:1076865/1‑140 (MQ=255)
                          tCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTc                                                                                                            <  2:453092/140‑1 (MQ=255)
                          tCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTc                                                                                                            <  1:1230910/140‑1 (MQ=255)
                           ccACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTcc                                                                                                           <  1:1265245/140‑1 (MQ=255)
                           ccACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTcc                                                                                                           >  2:1243260/1‑140 (MQ=255)
                              cGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGa                                                                                                        <  2:842479/140‑1 (MQ=255)
                                    tGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAagcagc                                                                                                  >  2:886753/1‑140 (MQ=255)
                                    tGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAagcagc                                                                                                  >  2:71551/1‑140 (MQ=255)
                                    tGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAagc                                                                                                     >  1:61090/1‑137 (MQ=255)
                                    tGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAagc                                                                                                     <  2:61090/137‑1 (MQ=255)
                                     gATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAgct                                                                                                 <  1:1228587/140‑1 (MQ=255)
                                      aTTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAgctc                                                                                                >  1:46891/1‑140 (MQ=255)
                                      aTTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAgctc                                                                                                >  2:251117/1‑140 (MQ=255)
                                      aTTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAgctc                                                                                                >  2:395455/1‑140 (MQ=255)
                                                tAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGt                                                                                      <  1:980934/140‑1 (MQ=255)
                                                tAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGt                                                                                      <  1:104879/140‑1 (MQ=255)
                                                  aaaCTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCg                                                                                    <  2:933530/140‑1 (MQ=255)
                                                  aaaCTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCg                                                                                    <  1:969044/140‑1 (MQ=255)
                                                    aCTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGct                                                                                  <  2:110997/140‑1 (MQ=255)
                                                    aCTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGct                                                                                  <  2:769688/140‑1 (MQ=255)
                                                    aCTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGct                                                                                  <  1:842767/140‑1 (MQ=255)
                                                      tGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGctct                                                                                >  1:1012612/1‑140 (MQ=255)
                                                      tGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTAGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGctct                                                                                >  2:568057/1‑140 (MQ=255)
                                                        tAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTc                                                                              >  1:284994/1‑140 (MQ=255)
                                                        tAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTc                                                                              >  2:427404/1‑140 (MQ=255)
                                                           ggACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCg                                                                                    >  1:574840/1‑131 (MQ=255)
                                                           ggACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCg                                                                                    <  2:574840/131‑1 (MQ=255)
                                                                ataaataaTGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGc                                                                      >  2:981900/1‑140 (MQ=255)
                                                                 taaataaTGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcg                                                                     <  2:627146/140‑1 (MQ=255)
                                                                         ggTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacga                                                             >  2:339190/1‑140 (MQ=255)
                                                                          gTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgag                                                            >  2:573165/1‑140 (MQ=255)
                                                                          gTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgag                                                            >  2:791417/1‑140 (MQ=255)
                                                                          gTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgag                                                            <  2:46891/140‑1 (MQ=255)
                                                                          gTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgag                                                            <  1:618876/140‑1 (MQ=255)
                                                                           ttGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgaga                                                           >  1:1181832/1‑140 (MQ=255)
                                                                           ttGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgaga                                                           >  2:541707/1‑140 (MQ=255)
                                                                           ttGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgaga                                                           >  1:185742/1‑140 (MQ=255)
                                                                           ttGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgaga                                                           >  1:597670/1‑140 (MQ=255)
                                                                           ttGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgaga                                                           >  2:984723/1‑140 (MQ=255)
                                                                           ttGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgaga                                                           >  2:255921/1‑140 (MQ=255)
                                                                           ttGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgaga                                                           >  1:970339/1‑140 (MQ=255)
                                                                             ggATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgagaaa                                                         >  1:1396151/1‑140 (MQ=255)
                                                                             ggATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGcgagaaacgagaaa                                                         >  1:251653/1‑140 (MQ=255)
                                                                               aTTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGc                                                       >  1:1377724/1‑140 (MQ=255)
                                                                                   aTCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTaa                                                   >  1:742279/1‑140 (MQ=255)
                                                                                   aTCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTaa                                                   >  1:847342/1‑140 (MQ=255)
                                                                                    tCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCATGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAAt                                                  >  1:539699/1‑140 (MQ=255)
                                                                                       cacaAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGc                                               <  2:1087706/140‑1 (MQ=255)
                                                                                         caAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAg                                             <  2:597670/140‑1 (MQ=255)
                                                                                         caAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAg                                             <  2:367017/140‑1 (MQ=255)
                                                                                         caAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAg                                             <  2:394160/140‑1 (MQ=255)
                                                                                         caAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGACAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAg                                             <  1:625298/140‑1 (MQ=255)
                                                                                          aaGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCATGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGc                                            <  2:539699/140‑1 (MQ=255)
                                                                                          aaGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGc                                            <  2:1126022/140‑1 (MQ=255)
                                                                                          aaGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGc                                            <  1:488439/140‑1 (MQ=255)
                                                                                            ggTAGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCgg                                          <  1:568057/140‑1 (MQ=255)
                                                                                             gTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCa                                              <  1:235005/135‑1 (MQ=255)
                                                                                             gTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCa                                              >  2:235005/1‑135 (MQ=255)
                                                                                               cGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCa                                              <  2:158496/133‑1 (MQ=255)
                                                                                               cGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCa                                              >  1:158496/1‑133 (MQ=255)
                                                                                               cGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCa                                              <  2:410589/133‑1 (MQ=255)
                                                                                               cGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCa                                              >  1:410589/1‑133 (MQ=255)
                                                                                               cGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCggtgg                                       <  1:1145398/140‑1 (MQ=255)
                                                                                               cGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCggtgg                                       <  1:290890/140‑1 (MQ=255)
                                                                                               cGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCggtgg                                       >  2:759680/1‑140 (MQ=255)
                                                                                                 cATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAGTCGGAGCGGTGGTa                                     >  2:869669/1‑140 (MQ=255)
                                                                                                  atatTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGTGAAAGCCTAATCGCAGCgg                                          >  1:659495/1‑134 (MQ=255)
                                                                                                  atatTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCgg                                          <  2:659495/134‑1 (MQ=255)
                                                                                                      tCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCa                                >  1:733112/1‑140 (MQ=255)
                                                                                                      tCGCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCa                                <  2:87765/140‑1 (MQ=255)
                                                                                                        gCATCAATCATTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACt                              <  2:400232/140‑1 (MQ=255)
                                                                                                            caatcaTTGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATa                          >  1:900320/1‑140 (MQ=255)
                                                                                                                  ttGCTTCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAgg                    <  1:759680/140‑1 (MQ=255)
                                                                                                                      ttCGAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGtttt                >  2:1320911/1‑140 (MQ=255)
                                                                                                                         gAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCa             >  2:652783/1‑140 (MQ=255)
                                                                                                                         gAAGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCa             <  1:427404/140‑1 (MQ=255)
                                                                                                                          aaGTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCACTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAg            >  1:782802/1‑140 (MQ=255)
                                                                                                                            gTTGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAGtt          >  1:553390/1‑140 (MQ=255)
                                                                                                                             ttGGCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAGTTc         >  2:505393/1‑140 (MQ=255)
                                                                                                                                gCCCGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAGTTCCTg      <  1:1076865/140‑1 (MQ=255)
                                                                                                                                   cGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAGTTCCTGAAc   <  1:339190/140‑1 (MQ=255)
                                                                                                                                   cGGTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAGTTCCTGAAc   <  2:553390/140‑1 (MQ=255)
                                                                                                                                    ggTCCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAGTTCCTGAACt  <  2:1012612/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
GGATCACCGTCAGAAAATGTCCGCGCTCCACGGCGCTGATTTTGGCCATAAAACTGTAGGGACGATAAATAATGGTTGGATTGATCCCACAAGGTCGCATATTCGCATCAATCATTGCTTCGAAGTTGGCCCGGTTCTGAAAGCGCATTTGTAGCCAGGGCAGCTCCTGAAGCAGCTCTTGCTCTTGTCGCTCTTCATAACGGCGAGAAACGAGAAAGCCTAATCGCAGCGGTGGTAGTTCACTGATAGTCAGGTTTTCCAGTTCCTGAACT  >  NC_000913/3066441‑3066712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A