Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,333,521 C→A intergenic (‑70/‑189) rplU ← / → ispB 50S ribosomal subunit protein L21/all‑trans‑octaprenyl‑diphosphate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,333,5210CA100.0% 243.3 / NA 68intergenic (‑70/‑189)rplU/ispB50S ribosomal subunit protein L21/all‑trans‑octaprenyl‑diphosphate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (39/29);  total (39/29)

CCAGGCGAACGGTCTGACCTTCGCTTACTCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCT  >  NC_000913/3333385‑3333656
                                                                                                                                        |                                                                                                                                       
ccAGGCGAACGGTCTGACCTTCGCTTACTCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGaa                                                                                                                                      >  1:131636/1‑140 (MQ=255)
               gACCTTCGCTTACTCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAacgc                                                                                                                       <  2:209241/140‑1 (MQ=255)
               gACCTTCGCTTACTCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAacgc                                                                                                                       <  1:401992/140‑1 (MQ=255)
                     cGCTTACTCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCt                                                                                                                 >  1:319406/1‑140 (MQ=255)
                     cGCTTACTCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCt                                                                                                                 >  1:169225/1‑140 (MQ=255)
                       cTTACTCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCttt                                                                                                               <  1:826465/140‑1 (MQ=255)
                            tCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACaa                                                                                                          >  2:957666/1‑140 (MQ=255)
                               gtgtTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTg                                                                                                       <  2:120996/140‑1 (MQ=255)
                               gtgtTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTg                                                                                                       <  2:946385/140‑1 (MQ=255)
                                 gttgttTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCt                                                                                                     <  1:427445/140‑1 (MQ=255)
                                      ttACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGt                                                                                                <  2:391159/140‑1 (MQ=255)
                                        accaccACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCa                                                                                              >  2:458656/1‑140 (MQ=255)
                                         ccaccaCTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCaa                                                                                             <  1:32948/140‑1 (MQ=255)
                                               cTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACg                                                                                       >  1:860381/1‑140 (MQ=255)
                                               cTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACg                                                                                       >  1:1402316/1‑140 (MQ=255)
                                               cTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACg                                                                                       >  2:1311852/1‑140 (MQ=255)
                                               cTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACg                                                                                       >  1:562609/1‑140 (MQ=255)
                                                          cgcgTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaaaaaa                                                                            >  1:1293362/1‑140 (MQ=255)
                                                            cgTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaa                                                                                <  2:1043573/134‑1 (MQ=255)
                                                            cgTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaa                                                                                >  1:1043573/1‑134 (MQ=255)
                                                            cgTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAaca                                                                          >  1:593975/1‑140 (MQ=255)
                                                              tACATATAAAACTCCGCTTCCGCGCACGCCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAAcaca                                                                        <  2:405128/140‑1 (MQ=255)
                                                                   ataAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTg                                                                   <  2:803303/140‑1 (MQ=255)
                                                                      aaaCTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTAc                                                                >  2:1321751/1‑140 (MQ=255)
                                                                        aCTCCGCTTCCGCGCACTCCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACgg                                                              <  1:43487/140‑1 (MQ=255)
                                                                        aCTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACgg                                                              <  1:482624/140‑1 (MQ=255)
                                                                        aCTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACgg                                                              <  1:1321751/140‑1 (MQ=255)
                                                                        aCTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACgg                                                              <  2:319406/140‑1 (MQ=255)
                                                                          tCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTa                                                            <  1:957666/140‑1 (MQ=255)
                                                                           ccGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTaa                                                           >  1:1243727/1‑140 (MQ=255)
                                                                            cGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAAc                                                          >  2:953093/1‑140 (MQ=255)
                                                                             gCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTATGGTAACg                                                         >  1:801826/1‑140 (MQ=255)
                                                                             gCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACg                                                         >  1:463210/1‑140 (MQ=255)
                                                                             gCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACg                                                         >  2:828396/1‑140 (MQ=255)
                                                                              cTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACgg                                                              >  2:1317485/1‑134 (MQ=255)
                                                                              cTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACgg                                                              <  1:1317485/134‑1 (MQ=255)
                                                                              cTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGt                                                        >  1:450245/1‑140 (MQ=255)
                                                                                    cgcACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCt                                                  >  2:210079/1‑140 (MQ=255)
                                                                                      cacaCCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCtgt                                                >  2:92833/1‑140 (MQ=255)
                                                                                        cacCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGc                                              <  1:1311852/140‑1 (MQ=255)
                                                                                         acCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGcc                                             >  2:803501/1‑140 (MQ=255)
                                                                                           cTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAt                                           <  1:210079/140‑1 (MQ=255)
                                                                                            ttttCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAtt                                          >  2:1000134/1‑140 (MQ=255)
                                                                                                     aTTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTa                                 >  2:426989/1‑140 (MQ=255)
                                                                                                     aTTCAGAGTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTa                                 >  2:992576/1‑140 (MQ=255)
                                                                                                          gagTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATc                            <  2:463210/140‑1 (MQ=255)
                                                                                                           agTGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCa                           >  2:586950/1‑140 (MQ=255)
                                                                                                             tGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAcc                         <  1:426989/140‑1 (MQ=255)
                                                                                                             tGCGCTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAcc                         <  2:1122291/140‑1 (MQ=255)
                                                                                                               cgcTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCt                       <  2:131636/140‑1 (MQ=255)
                                                                                                               cgcTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCt                       >  1:1321250/1‑140 (MQ=255)
                                                                                                               cgcTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCt                       >  2:1169261/1‑140 (MQ=255)
                                                                                                               cgcTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCt                       >  2:382702/1‑140 (MQ=255)
                                                                                                                gcTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCta                      >  1:1128588/1‑140 (MQ=255)
                                                                                                                gcTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCta                      <  2:1321250/140‑1 (MQ=255)
                                                                                                                gcTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCta                      <  1:953093/140‑1 (MQ=255)
                                                                                                                gcTATAAATATTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCta                      <  2:1293362/140‑1 (MQ=255)
                                                                                                                       atatTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCt               <  2:1128588/140‑1 (MQ=255)
                                                                                                                       atatTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCt               <  1:1169261/140‑1 (MQ=255)
                                                                                                                         atTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACaa                              <  1:21789/123‑1 (MQ=255)
                                                                                                                         atTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACaa                              >  2:21789/1‑123 (MQ=255)
                                                                                                                         atTCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTaa             >  2:1110005/1‑140 (MQ=255)
                                                                                                                          ttCACAATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAAc            >  1:605212/1‑140 (MQ=255)
                                                                                                                            cacaATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCa          >  2:46583/1‑140 (MQ=255)
                                                                                                                            cacaATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCa          >  1:422458/1‑140 (MQ=255)
                                                                                                                            cacaATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCa          >  2:972097/1‑140 (MQ=255)
                                                                                                                             acaATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCAt         <  2:562609/140‑1 (MQ=255)
                                                                                                                              caATAGGGCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATa        >  2:4144/1‑140 (MQ=255)
                                                                                                                                    ggCGAGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCt  >  1:593428/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CCAGGCGAACGGTCTGACCTTCGCTTACTCGGTGTTGTTTACCACCACTTTGGAAAACCGCGTACATATAAAACTCCGCTTCCGCGCACACCTTTTCAATGATTCAGAGTGCGCTATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAACCATAAACCCT  >  NC_000913/3333385‑3333656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A