Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,441,433	A→G	R81R (CGT→CGC)	rpsD ←	30S ribosomal subunit protein S4

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,441,433	0	A	G	100.0%	379.2 / NA	104	R81R (CGT→CGC)	rpsD	30S ribosomal subunit protein S4
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (42/62); total (42/62)

Only 100 of 104 total aligned reads displayed.

CCGTTTACCATAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGACGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAG  >  NC_000913/3441296‑3441566

ccGTTTACCATAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCg                                                                                                                                     >  1:788127/1‑140 (MQ=255)

     tACCATAATTGCTTTATGGCTAACCAGTTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGtgctg                                                                                                                                <  2:10462/140‑1 (MQ=255)

     tACCATAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGtgctg                                                                                                                                <  1:36942/140‑1 (MQ=255)

     tACCATAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGtgctg                                                                                                                                >  2:1106827/1‑140 (MQ=255)

     tACCATAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGtgctg                                                                                                                                <  2:1144374/140‑1 (MQ=255)

        cATAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGctt                                                                                                                             <  2:958595/140‑1 (MQ=255)

        cATAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGctt                                                                                                                             <  2:623670/140‑1 (MQ=255)

         aTAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGcttc                                                                                                                            <  1:545332/140‑1 (MQ=255)

          tAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGcttct                                                                                                                           <  1:552587/140‑1 (MQ=255)

            aTTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCttt                                                                                                                         >  2:517134/1‑140 (MQ=255)

             ttGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTg                                                                                                                        <  1:1207154/140‑1 (MQ=255)

             ttGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTg                                                                                                                        >  2:1307068/1‑140 (MQ=255)

              tGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTgt                                                                                                                       >  2:1078835/1‑140 (MQ=255)

               gCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTgta                                                                                                                      <  2:730702/140‑1 (MQ=255)

                cTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGtgctg                                                                                                                                >  1:496958/1‑129 (MQ=255)

                cTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGtgctg                                                                                                                                <  2:496958/129‑1 (MQ=255)

                cTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTgtag                                                                                                                     >  2:858124/1‑140 (MQ=255)

                 tttATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTgtagt                                                                                                                    <  2:164866/140‑1 (MQ=255)

                 tttATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTgtagt                                                                                                                    <  1:638150/140‑1 (MQ=255)

                 tttATGGCTAACCAGCTGACGTGCTTCTGCACGAGTAGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTgtagt                                                                                                                    <  2:242097/140‑1 (MQ=255)

                  ttATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGcttct                                                                                                                           <  2:563201/132‑1 (MQ=255)

                  ttATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGcttct                                                                                                                           >  1:563201/1‑132 (MQ=255)

                    aTGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGTCGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTagtagt                                                                                                                 >  2:260857/1‑140 (MQ=255)

                     tGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTgtagt                                                                                                                    <  2:277805/136‑1 (MQ=255)

                     tGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGtt                                                                                                                >  2:334945/1‑140 (MQ=255)

                           aCCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGaa                                                                                                          >  1:776993/1‑140 (MQ=255)

                           aCCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGaa                                                                                                          >  2:264227/1‑140 (MQ=255)

                             cAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACt                                                                                                        <  1:577941/140‑1 (MQ=255)

                               gCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGa                                                                                                      <  2:715750/140‑1 (MQ=255)

                               gCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGa                                                                                                      <  2:1169818/140‑1 (MQ=255)

                               gCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGa                                                                                                      <  1:915469/140‑1 (MQ=255)

                                 tGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACg                                                                                                    <  2:1159109/140‑1 (MQ=255)

                                    cGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTc                                                                                                 <  1:267629/140‑1 (MQ=255)

                                        cTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGc                                                                                             <  1:488060/140‑1 (MQ=255)

                                        cTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGc                                                                                             <  2:113054/140‑1 (MQ=255)

                                        cTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGc                                                                                             >  1:16061/1‑140 (MQ=255)

                                        cTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGc                                                                                             <  1:1008462/140‑1 (MQ=255)

                                        cTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGc                                                                                             <  1:1078835/140‑1 (MQ=255)

                                         ttCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGca                                                                                            <  1:1042969/140‑1 (MQ=255)

                                         ttCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGca                                                                                            <  1:599879/140‑1 (MQ=255)

                                         ttCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGca                                                                                            <  2:808170/140‑1 (MQ=255)

                                         ttCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGca                                                                                            <  1:733896/140‑1 (MQ=255)

                                              cACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCa                                                                                       >  2:1383745/1‑140 (MQ=255)

                                                   gTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGAt                                                                                  >  1:1165639/1‑140 (MQ=255)

                                                       cACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACgg                                                                              >  2:780032/1‑140 (MQ=255)

                                                        aCCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGc                                                                             <  1:306262/140‑1 (MQ=255)

                                                        aCCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGc                                                                             >  1:256654/1‑140 (MQ=255)

                                                                ccATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACtttt                                                                     <  2:776993/140‑1 (MQ=255)

                                                                       gTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCtttt                                                              <  2:1165639/140‑1 (MQ=255)

                                                                          taCAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTCCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCAc                                                           >  1:1354617/1‑140 (MQ=255)

                                                                           aCAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACg                                                          <  2:788127/140‑1 (MQ=255)

                                                                           aCAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACg                                                          >  2:1128973/1‑140 (MQ=255)

                                                                               cGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAAc                                                      >  1:649063/1‑140 (MQ=255)

                                                                               cGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAAc                                                      >  1:467975/1‑140 (MQ=255)

                                                                                gTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACt                                                     <  1:1383745/140‑1 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCt                                                                 <  1:133107/126‑1 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCt                                                                 >  2:133107/1‑126 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  2:402258/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   <  1:1307068/140‑1 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  1:1178879/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   <  1:1376447/140‑1 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  1:520616/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   <  1:1106827/140‑1 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  1:1077678/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  2:727128/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   <  1:727128/140‑1 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  1:740300/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  1:903906/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   <  1:929708/140‑1 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  1:959920/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCCTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  2:294445/1‑140 (MQ=255)

                                                                                  tGTCCAGACGACCTTCCAGCAGAGCAAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGc                                                   >  2:508884/1‑140 (MQ=255)

                                                                                   gTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGca                                                  <  2:1039638/140‑1 (MQ=255)

                                                                                    tCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACt                                                     >  1:140704/1‑136 (MQ=255)

                                                                                    tCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACt                                                     <  2:140704/136‑1 (MQ=255)

                                                                                    tCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGcac                                                 >  2:1187473/1‑140 (MQ=255)

                                                                                    tCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGcac                                                 <  1:858124/140‑1 (MQ=255)

                                                                                    tCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGcac                                                 >  2:1216134/1‑140 (MQ=255)

                                                                                      cAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCacac                                               <  1:780032/140‑1 (MQ=255)

                                                                                       aGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACAcc                                              <  2:467975/140‑1 (MQ=255)

                                                                                        gacgacCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCa                                             <  1:76570/140‑1 (MQ=255)

                                                                                         acgacCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCGGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCAt                                            >  2:1305726/1‑140 (MQ=255)

                                                                                         acgacCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCAt                                            <  1:1243442/140‑1 (MQ=255)

                                                                                              cTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTca                                       >  1:1144134/1‑140 (MQ=255)

                                                                                                    gcagAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTcagacaga                                 <  2:1159840/140‑1 (MQ=255)

                                                                                                     cagAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACCGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCagacagac                                >  2:24366/1‑140 (MQ=255)

                                                                                                      agagCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGAcg                               <  2:520616/140‑1 (MQ=255)

                                                                                                      agagCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGAcg                               <  2:1178879/140‑1 (MQ=255)

                                                                                                        agCCAACAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGAcgcg                             >  2:149590/1‑140 (MQ=255)

                                                                                                             aCAGGTTTTCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTa                        <  1:260857/140‑1 (MQ=255)

                                                                                                                   tttCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCa                  <  2:607578/140‑1 (MQ=255)

                                                                                                                   tttCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCa                  <  1:264227/140‑1 (MQ=255)

                                                                                                                   tttCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCa                  <  2:1077678/140‑1 (MQ=255)

                                                                                                                   tttCACCGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCa                  <  1:517134/140‑1 (MQ=255)

                                                                                                                        ccGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTg             <  1:1401746/140‑1 (MQ=255)

                                                                                                                        ccGGTGTTGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTg             <  1:508884/140‑1 (MQ=255)

                                                                                                                              ttGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGcc       >  1:261748/1‑140 (MQ=255)

                                                                                                                              ttGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGcc       <  1:149590/140‑1 (MQ=255)

                                                                                                                               tGCCTTTCAGGCGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCa      <  1:1187473/140‑1 (MQ=255)

                                                                                                                                   tttCAGGCGTGCTTCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAg  >  1:774164/1‑140 (MQ=255)

CCGTTTACCATAATTGCTTTATGGCTAACCAGCTGACGTGCTTCTGCACGAGTGGCACCGAAGCCCATACGGTATACAACGTTGTCCAGACGACCTTCCAGCAGAGCCAACAGGTTTTCACCGGTGTTGCCTTTCAGACGTGCTGCTTCTTTGTAGTAGTTACGGAACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAG  >  NC_000913/3441296‑3441566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A