Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,747,393 C→T R104C (CGC→TGC)  lyxK → L‑xylulose kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,747,3930CT100.0% 260.4 / NA 73R104C (CGC→TGC) lyxKL‑xylulose kinase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (44/29);  total (44/29)

ATTCGCGCCCTGCTTACTCATTCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACCGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGAAAGAGCACGAACCAGAAC  >  NC_000913/3747258‑3747528
                                                                                                                                       |                                                                                                                                       
aTTCGCGCCCTGCTTACTCATTCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGActgccg                                                                                                                                     >  2:558348/1‑140 (MQ=255)
  tCGCGCCCTGCTTACTCATTCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCggg                                                                                                                                   <  2:755728/140‑1 (MQ=255)
  tCGCGCCCTGCTTACTCATTCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCggg                                                                                                                                   <  1:558348/140‑1 (MQ=255)
     cgcCCTGCTTACTCATTCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGa                                                                                                                                >  1:247691/1‑140 (MQ=255)
        ccTGCTTACTCATTCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATgg                                                                                                                             >  2:269571/1‑140 (MQ=255)
                  cATTCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAAtcgttcg                                                                                                                   >  2:987166/1‑140 (MQ=255)
                    ttCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTtcgtc                                                                                                                 >  1:1087347/1‑140 (MQ=255)
                    ttCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTtcgtc                                                                                                                 >  2:1252327/1‑140 (MQ=255)
                     tCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTtcgtcg                                                                                                                >  2:953260/1‑140 (MQ=255)
                      cTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGc                                                                                                               >  2:2106/1‑140 (MQ=255)
                      cTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGc                                                                                                               >  1:1303629/1‑140 (MQ=255)
                      cTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGc                                                                                                               >  2:1198035/1‑140 (MQ=255)
                      cTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGc                                                                                                               >  2:341833/1‑140 (MQ=255)
                       tGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCt                                                                                                              <  1:532925/140‑1 (MQ=255)
                       tGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCt                                                                                                              <  1:953260/140‑1 (MQ=255)
                         gtgtTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTgg                                                                                                            <  1:1259282/140‑1 (MQ=255)
                         gtgtTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTgg                                                                                                            <  2:827672/140‑1 (MQ=255)
                          tgtTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGc                                                                                                           >  2:901371/1‑140 (MQ=255)
                            ttAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAg                                                                                                         >  1:1392061/1‑140 (MQ=255)
                             tAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAgg                                                                                                        >  2:1317159/1‑140 (MQ=255)
                              aGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGa                                                                                                       >  2:162206/1‑140 (MQ=255)
                              aGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGa                                                                                                       >  2:510310/1‑140 (MQ=255)
                              aGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGa                                                                                                       >  1:253258/1‑140 (MQ=255)
                               gCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGaa                                                                                                      >  2:780450/1‑140 (MQ=255)
                                   ggAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATg                                                                                                  >  1:598733/1‑140 (MQ=255)
                                      aCAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCa                                                                                               >  2:460001/1‑140 (MQ=255)
                                               cGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGaaa                                                                                      >  2:282181/1‑140 (MQ=255)
                                                     cGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAActct                                                                                <  2:253258/140‑1 (MQ=255)
                                                            tcCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCt                                                                         >  1:517758/1‑140 (MQ=255)
                                                            tcCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCt                                                                         >  1:366061/1‑140 (MQ=255)
                                                               gCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGAc                                                                      <  1:1198035/140‑1 (MQ=255)
                                                                cacaGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGAcc                                                                     >  2:546910/1‑140 (MQ=255)
                                                                cacaGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGAcc                                                                     >  2:963397/1‑140 (MQ=255)
                                                                    gggAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGAc                                                                 >  2:159017/1‑140 (MQ=255)
                                                                     ggAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACa                                                                >  2:32344/1‑140 (MQ=255)
                                                                     ggAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGCTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACa                                                                >  2:1166585/1‑140 (MQ=255)
                                                                      gAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGAc                                                                      <  2:1407806/133‑1 (MQ=255)
                                                                      gAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGAc                                                                      >  1:1407806/1‑133 (MQ=255)
                                                                      gAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACaa                                                               <  1:546910/140‑1 (MQ=255)
                                                                        aaGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAAc                                                             >  1:937108/1‑140 (MQ=255)
                                                                        aaGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAAc                                                             >  2:275596/1‑140 (MQ=255)
                                                                             cTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTtgt                                                        >  1:737710/1‑140 (MQ=255)
                                                                               tGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGTAAAAACTCTACCCGCTGACCCGACAAACCTTGTgg                                                      >  2:974086/1‑140 (MQ=255)
                                                                               tGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACaa                                                               <  2:850230/131‑1 (MQ=255)
                                                                               tGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACaa                                                               >  1:850230/1‑131 (MQ=255)
                                                                               tGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTgg                                                      >  1:1015290/1‑140 (MQ=255)
                                                                               tGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTgg                                                      >  1:1317651/1‑140 (MQ=255)
                                                                               tGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTgg                                                      <  2:1190135/140‑1 (MQ=255)
                                                                               tGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTgg                                                      >  2:1183370/1‑140 (MQ=255)
                                                                               tGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTgg                                                      <  2:1082996/140‑1 (MQ=255)
                                                                                 tttttGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGAc                                                    <  1:987166/140‑1 (MQ=255)
                                                                                    ttGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCgg                                                 <  1:275596/140‑1 (MQ=255)
                                                                                    ttGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCgg                                                 <  2:1087347/140‑1 (MQ=255)
                                                                                     tGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCggg                                                >  2:1334890/1‑140 (MQ=255)
                                                                                      gCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGc                                               <  1:989271/140‑1 (MQ=255)
                                                                                         ggATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATc                                            <  2:1013470/140‑1 (MQ=255)
                                                                                           aTAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCg                                          >  2:614236/1‑140 (MQ=255)
                                                                                            tAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCgg                                         <  1:460001/140‑1 (MQ=255)
                                                                                               aaaCGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGgtgt                                      <  2:247691/140‑1 (MQ=255)
                                                                                               aaaCGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGgtgt                                      <  2:737710/140‑1 (MQ=255)
                                                                                               aaaCGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGgtgt                                      <  2:569829/140‑1 (MQ=255)
                                                                                                aaCGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTc                                     <  2:517758/140‑1 (MQ=255)
                                                                                                 aCGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCg                                    <  2:1147280/140‑1 (MQ=255)
                                                                                                    aCAAACCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTg                                 <  1:614236/140‑1 (MQ=255)
                                                                                                       aaCCGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGACATCCGGTGTCGCTGTTa                              <  1:269571/140‑1 (MQ=255)
                                                                                                         ccGCTCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACg                            <  1:536095/140‑1 (MQ=255)
                                                                                                             tCGGGAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACgctgg                        >  2:1369642/1‑140 (MQ=255)
                                                                                                                 gAATGCTATTTTGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGa                    <  2:49863/140‑1 (MQ=255)
                                                                                                                          tttGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGAAAGAGCACg           <  1:162206/140‑1 (MQ=255)
                                                                                                                           ttGTCCTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGAAAGAGCACGa          >  2:1070356/1‑140 (MQ=255)
                                                                                                                                cTCGGACTGTCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGAAAGAGCACGAACCAg     >  2:547439/1‑140 (MQ=255)
                                                                                                                                cTCGGACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGAAAGAGCACGAACCAg     >  1:59459/1‑140 (MQ=255)
                                                                                                                                   ggACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGAAAGAGCACGAACCAGAAc  >  1:859552/1‑140 (MQ=255)
                                                                                                                                   ggACTGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGAAAGAGCACGAACCAGAAc  >  2:928472/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
ATTCGCGCCCTGCTTACTCATTCTGGTGTTAGCGGGGAACAAATTGTCGGTATCGGCATCTCCGCACAGGGAAAGGGCTTGTTTTTGCTGGATAAAAACGACAAACCGCTCGGGAATGCTATTTTGTCCTCGGACCGCCGGGCGATGGAAATCGTTCGTCGCTGGCAGGAAGATGGCATCCCGGAAAAACTCTACCCGCTGACCCGACAAACCTTGTGGACCGGGCATCCGGTGTCGCTGTTACGCTGGCTGAAAGAGCACGAACCAGAAC  >  NC_000913/3747258‑3747528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A