Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,553,276 A→G T126A (ACG→GCG)  uxuB → D‑mannonate oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,553,2760AG100.0% 315.7 / NA 86T126A (ACG→GCG) uxuBD‑mannonate oxidoreductase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/47);  total (39/47)

CGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCG  >  NC_000913/4553140‑4553404
                                                                                                                                        |                                                                                                                                
cGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCgg                                                                                                                               >  1:220222/1‑140 (MQ=255)
cGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCgg                                                                                                                               >  2:1409814/1‑140 (MQ=255)
cGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCgg                                                                                                                               >  1:513214/1‑140 (MQ=255)
cGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCgg                                                                                                                               >  1:1168070/1‑140 (MQ=255)
cGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCgg                                                                                                                               >  2:668688/1‑140 (MQ=255)
cGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCgg                                                                                                                               >  2:108755/1‑140 (MQ=255)
cGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCgg                                                                                                                               >  2:1314713/1‑140 (MQ=255)
  tAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTc                                                                                                                             >  2:999373/1‑140 (MQ=255)
  tAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTc                                                                                                                             >  1:706695/1‑140 (MQ=255)
  tAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTc                                                                                                                             >  1:371484/1‑140 (MQ=255)
  tAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTc                                                                                                                             >  2:887779/1‑140 (MQ=255)
   aGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCa                                                                                                                            >  1:773468/1‑140 (MQ=255)
     cGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACg                                                                                                                          >  1:1137504/1‑140 (MQ=255)
        aaaaaGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGaa                                                                                                                       >  2:840447/1‑140 (MQ=255)
        aaaaaGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGaa                                                                                                                       >  2:519448/1‑140 (MQ=255)
          aaaGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGaaaa                                                                                                                     >  1:195418/1‑140 (MQ=255)
           aaGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGaaaaa                                                                                                                    <  2:845811/140‑1 (MQ=255)
                gcAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTa                                                                                                               <  2:517152/140‑1 (MQ=255)
                gcAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTa                                                                                                               <  1:929462/140‑1 (MQ=255)
                  agagagCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACt                                                                                                             >  1:688643/1‑140 (MQ=255)
                        cACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTg                                                                                                       >  2:536409/1‑140 (MQ=255)
                         aCCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGa                                                                                                      >  1:58370/1‑140 (MQ=255)
                             aGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCg                                                                                                  >  2:528574/1‑140 (MQ=255)
                             aGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCg                                                                                                  >  1:892413/1‑140 (MQ=255)
                             aGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCg                                                                                                  >  2:784280/1‑140 (MQ=255)
                               cTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGc                                                                                                <  1:1393754/140‑1 (MQ=255)
                               cTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGc                                                                                                <  1:1393753/140‑1 (MQ=255)
                                tGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCa                                                                                               >  2:962058/1‑140 (MQ=255)
                                  aaaaTTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAg                                                                                             >  2:467661/1‑140 (MQ=255)
                                  aaaaTTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAg                                                                                             <  2:195418/140‑1 (MQ=255)
                                  aaaaTTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAg                                                                                             >  2:428010/1‑140 (MQ=255)
                                    aaTTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCg                                                                                           <  1:1398449/140‑1 (MQ=255)
                                     aTTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCgg                                                                                          <  1:1295959/140‑1 (MQ=255)
                                       tATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTAACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTc                                                                                        >  1:1315697/1‑140 (MQ=255)
                                         tCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCaa                                                                                      >  2:1220677/1‑140 (MQ=255)
                                          cGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAAc                                                                                     <  2:371484/140‑1 (MQ=255)
                                          cGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAAc                                                                                     <  2:46040/140‑1 (MQ=255)
                                          cGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAAc                                                                                     <  2:1137504/140‑1 (MQ=255)
                                          cGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAAc                                                                                     <  1:962058/140‑1 (MQ=255)
                                            gTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTg                                                                                   <  2:1160523/140‑1 (MQ=255)
                                              tCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGa                                                                                 >  2:1309930/1‑140 (MQ=255)
                                              tCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGa                                                                                 <  1:784280/140‑1 (MQ=255)
                                              tCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGa                                                                                 <  1:993099/140‑1 (MQ=255)
                                               cGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAt                                                                                <  1:110172/140‑1 (MQ=255)
                                               cGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGAt                                                                                <  1:811988/140‑1 (MQ=255)
                                                       gaagCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATaa                                                                        <  1:1314713/140‑1 (MQ=255)
                                                          gcgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAAccc                                                                     >  2:659097/1‑140 (MQ=255)
                                                           cgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCg                                                                    >  1:963873/1‑140 (MQ=255)
                                                           cgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCg                                                                    <  1:820182/140‑1 (MQ=255)
                                                           cgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCg                                                                    <  1:668688/140‑1 (MQ=255)
                                                           cgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCg                                                                    >  1:217329/1‑140 (MQ=255)
                                                           cgcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCCCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCg                                                                    >  2:1124818/1‑140 (MQ=255)
                                                            gcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                                                   <  2:963873/140‑1 (MQ=255)
                                                            gcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                                                   <  2:1168070/140‑1 (MQ=255)
                                                            gcTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGc                                                                   >  2:434907/1‑140 (MQ=255)
                                                                  tCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCa                                                             >  2:157175/1‑140 (MQ=255)
                                                                    cGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAg                                                           <  1:1220677/140‑1 (MQ=255)
                                                                    cGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAg                                                           <  1:599440/140‑1 (MQ=255)
                                                                     ggAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGc                                                          <  1:999373/140‑1 (MQ=255)
                                                                      gAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCa                                                         <  1:467661/140‑1 (MQ=255)
                                                                          tCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGAt                                                     <  2:773468/140‑1 (MQ=255)
                                                                             aTGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTg                                                  <  2:220222/140‑1 (MQ=255)
                                                                             aTGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTg                                                  <  1:1144112/140‑1 (MQ=255)
                                                                             aTGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTg                                                  <  1:519448/140‑1 (MQ=255)
                                                                                   gCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAAc                                            >  1:1194806/1‑140 (MQ=255)
                                                                                    cGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAAcc                                           >  2:1148640/1‑140 (MQ=255)
                                                                                     gAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAAccc                                          <  2:513214/140‑1 (MQ=255)
                                                                                       aGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGa                                        <  2:416558/140‑1 (MQ=255)
                                                                                       aGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGa                                        <  1:1148640/140‑1 (MQ=255)
                                                                                         gTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTAACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACt                                      <  2:1315697/140‑1 (MQ=255)
                                                                                            ttCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTgcg                                   >  1:53507/1‑140 (MQ=255)
                                                                                               tcAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACACGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCg                                <  1:428010/140‑1 (MQ=255)
                                                                                                  aCGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGagg                             >  2:958897/1‑138 (MQ=255)
                                                                                                    gcgATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTc                           <  2:688643/140‑1 (MQ=255)
                                                                                                      gATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCcg                         <  2:1194806/140‑1 (MQ=255)
                                                                                                       aTGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCcgc                        >  2:512030/1‑140 (MQ=255)
                                                                                                        tGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCcgcg                       <  1:512030/140‑1 (MQ=255)
                                                                                                        tGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCcgcg                       <  1:1309930/140‑1 (MQ=255)
                                                                                                        tGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCcgcg                       <  2:217329/140‑1 (MQ=255)
                                                                                                        tGGCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCcgcg                       <  1:1409814/140‑1 (MQ=255)
                                                                                                         ggCGCGTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGa                      <  1:659097/140‑1 (MQ=255)
                                                                                                           cgcgTCCGCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGAtt                    <  1:105760/140‑1 (MQ=255)
                                                                                                                  gCAAACGGCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACa             <  1:840447/140‑1 (MQ=255)
                                                                                                                  ccAAACGGCGATTGTCCCTCCAGCGGGCACGGAAAAAGGCTTCTGCGCTGATGCGGCAAGCGGGCAACTGGATCCCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACa             <  2:53507/139‑1 (MQ=255)
                                                                                                                         gCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGa      <  1:509884/140‑1 (MQ=255)
                                                                                                                         gCGATTGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGa      <  1:958897/140‑1 (MQ=255)
                                                                                                                             ttGTCTCTCTAGCGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCg  <  1:528574/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                
CGTAGCGGAAAAAGGCGCAGAGAGCACCGAGCTGAAAATTATCGGTTCGATGAAAGAAGCGCTGCATCCGGAAATCGATGGCTGCGAAGGTATTCTCAACGCGATGGCGCGTCCGCAAACGGCGATTGTCTCTCTAACGGTCACGGAAAAAGGCTACTGCGCTGATGCGGCAAGCGGTCAACTGGATCTCAATAACCCGCTGATCAAGCACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCG  >  NC_000913/4553140‑4553404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A