Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,574,754 T→C pseudogene (620/2721 nt) yjiV → putative uncharacterized protein YjiV

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,574,7540TC100.0% 351.4 / NA 96pseudogene (620/2721 nt)yjiVputative uncharacterized protein YjiV
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (51/45);  total (51/45)

TGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAA  >  NC_000913/4574620‑4574888
                                                                                                                                      |                                                                                                                                      
tgatgaAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCAcgcg                                                                                                                                   >  1:102533/1‑140 (MQ=255)
tgatgaAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCAcgcg                                                                                                                                   >  1:63736/1‑140 (MQ=255)
                 gCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAAtt                                                                                                                  >  1:717378/1‑140 (MQ=255)
                  cGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATtc                                                                                                                 >  2:919898/1‑140 (MQ=255)
                    tCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATtctc                                                                                                               <  1:486232/140‑1 (MQ=255)
                    tCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATtct                                                                                                                <  2:778375/139‑1 (MQ=255)
                    tCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATtct                                                                                                                >  1:778375/1‑139 (MQ=255)
                      ggACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAg                                                                                                             <  2:63736/140‑1 (MQ=255)
                      ggACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAg                                                                                                             <  2:102533/140‑1 (MQ=255)
                         ccAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTg                                                                                                          <  2:792124/140‑1 (MQ=255)
                          cAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCt                                                                                                           >  2:398131/1‑138 (MQ=255)
                          cAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCt                                                                                                           <  1:398131/138‑1 (MQ=255)
                          cAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTgg                                                                                                         >  1:63666/1‑140 (MQ=255)
                            gATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCa                                                                                                       <  1:317724/140‑1 (MQ=255)
                                  ttGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCaaaa                                                                                                 >  1:182514/1‑139 (MQ=255)
                                      cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                                                                             <  1:901622/140‑1 (MQ=255)
                                      cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                                                                             <  1:226303/140‑1 (MQ=255)
                                      cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                                                                             <  2:779048/140‑1 (MQ=255)
                                      cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                                                                             <  2:1276586/140‑1 (MQ=255)
                                      cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                                                                             <  2:348979/140‑1 (MQ=255)
                                      cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                                                                             <  2:562146/140‑1 (MQ=255)
                                      cAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACg                                                                                             <  1:581065/140‑1 (MQ=255)
                                              ggTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTc                                                                                     >  1:737690/1‑140 (MQ=255)
                                              ggTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTc                                                                                     >  1:680434/1‑140 (MQ=255)
                                                   tcgACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAg                                                                                <  1:216682/140‑1 (MQ=255)
                                                     gACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAgcg                                                                              <  1:841076/140‑1 (MQ=255)
                                                       cTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGcc                                                                            >  1:1186997/1‑140 (MQ=255)
                                                        tcatcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCg                                                                           <  1:920706/140‑1 (MQ=255)
                                                         catcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCaaa                                                                                         <  1:665800/125‑1 (MQ=255)
                                                         catcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCaaa                                                                                         >  2:665800/1‑125 (MQ=255)
                                                          atcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaa                                                                         >  2:815598/1‑140 (MQ=255)
                                                          atcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaa                                                                         <  1:798351/140‑1 (MQ=255)
                                                          atcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaa                                                                         <  1:248657/140‑1 (MQ=255)
                                                          atcaCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaa                                                                         >  2:946479/1‑140 (MQ=255)
                                                            caCCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatg                                                                       >  1:849721/1‑140 (MQ=255)
                                                                   acagacagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGaatgccaatgc                                                                <  1:919898/140‑1 (MQ=255)
                                                                     agacagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCg                                                              <  1:803521/140‑1 (MQ=255)
                                                                      gacagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGa                                                             >  2:1183162/1‑140 (MQ=255)
                                                                       acagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGAt                                                            <  2:737690/140‑1 (MQ=255)
                                                                       acagTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGAt                                                            <  2:680434/140‑1 (MQ=255)
                                                                         agTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCt                                                          >  2:477935/1‑140 (MQ=255)
                                                                         agTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCt                                                          >  2:1160947/1‑140 (MQ=255)
                                                                         agTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCt                                                          >  2:1108680/1‑140 (MQ=255)
                                                                          gTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTg                                                         >  1:623632/1‑140 (MQ=255)
                                                                           tCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTgg                                                        >  1:1071596/1‑140 (MQ=255)
                                                                           tCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTgg                                                        >  2:485859/1‑140 (MQ=255)
                                                                           tCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTgg                                                        >  1:267823/1‑140 (MQ=255)
                                                                           tCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTgg                                                        >  2:635445/1‑140 (MQ=255)
                                                                            cGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGa                                                       >  1:744495/1‑140 (MQ=255)
                                                                                   ggACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTa                                                <  2:803234/140‑1 (MQ=255)
                                                                                   ggACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTa                                                >  2:559965/1‑140 (MQ=255)
                                                                                    gACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAg                                               <  1:484311/140‑1 (MQ=255)
                                                                                     aCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGc                                              >  2:89253/1‑140 (MQ=255)
                                                                                     aCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGc                                              >  2:142321/1‑140 (MQ=255)
                                                                                     aCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGc                                              >  1:431181/1‑140 (MQ=255)
                                                                                     aCAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGc                                              >  1:1147343/1‑140 (MQ=255)
                                                                                        gCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGGAAAATTAGCGGc                                           <  1:1294799/140‑1 (MQ=255)
                                                                                        gCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGc                                           >  1:363148/1‑140 (MQ=255)
                                                                                        gCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGc                                           <  2:451021/140‑1 (MQ=255)
                                                                                        gCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGc                                           <  1:1289963/140‑1 (MQ=255)
                                                                                         cccGAATGGCGGTGCGTATGCAGCAAGAGGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGcc                                          >  2:1048659/1‑140 (MQ=255)
                                                                                         cccGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGcc                                          <  1:162345/140‑1 (MQ=255)
                                                                                         cccGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGcc                                          <  2:363148/140‑1 (MQ=255)
                                                                                            gAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAgg                                       <  2:849721/140‑1 (MQ=255)
                                                                                             aaTGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAggg                                      <  1:93646/140‑1 (MQ=255)
                                                                                             aaTGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAggg                                      <  2:442944/140‑1 (MQ=255)
                                                                                              aTGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGc                                           >  1:733516/1‑134 (MQ=255)
                                                                                              aTGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGc                                           <  2:733516/134‑1 (MQ=255)
                                                                                                  cGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaag                                 <  2:16382/140‑1 (MQ=255)
                                                                                                   ggTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaagc                                <  2:63666/140‑1 (MQ=255)
                                                                                                   ggTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaagc                                >  1:1105784/1‑140 (MQ=255)
                                                                                                   ggTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaagc                                >  2:87420/1‑140 (MQ=255)
                                                                                                   ggTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCC‑ATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaagca                               >  1:229030/1‑140 (MQ=255)
                                                                                                    gTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaagca                               <  1:617122/140‑1 (MQ=255)
                                                                                                      gCGTATGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGaagcaag                             <  1:1183162/140‑1 (MQ=255)
                                                                                                           tGCAGCAAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGt                        >  2:1302434/1‑140 (MQ=255)
                                                                                                              agcaAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAg                     <  2:136185/140‑1 (MQ=255)
                                                                                                              agcaAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAg                     >  1:136185/1‑140 (MQ=255)
                                                                                                               gcaAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgc                    >  2:1148752/1‑140 (MQ=255)
                                                                                                               gcaAGAAGCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgc                    >  2:1051752/1‑140 (MQ=255)
                                                                                                                 aagaagCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcag                  >  2:937749/1‑140 (MQ=255)
                                                                                                                   gaagCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcaggc                >  2:1186738/1‑140 (MQ=255)
                                                                                                                    aagCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcaggca               >  1:725325/1‑140 (MQ=255)
                                                                                                                    aagCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcaggca               >  1:75569/1‑140 (MQ=255)
                                                                                                                     agCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcaggcag              <  1:87420/140‑1 (MQ=255)
                                                                                                                     agCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcaggcag              >  1:302068/1‑140 (MQ=255)
                                                                                                                     agCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcaggcag              <  1:254728/140‑1 (MQ=255)
                                                                                                                     agCAGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcaggcag              <  1:1186738/140‑1 (MQ=255)
                                                                                                                        aGAACGCAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCagaag           >  2:1032655/1‑140 (MQ=255)
                                                                                                                              cAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcagg                 >  2:1068744/1‑128 (MQ=255)
                                                                                                                              cAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAgcagg                 <  1:1068744/128‑1 (MQ=255)
                                                                                                                              cAGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATc     >  1:480003/1‑140 (MQ=255)
                                                                                                                               aGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCg    >  1:1209972/1‑140 (MQ=255)
                                                                                                                               aGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCg    <  1:1160947/140‑1 (MQ=255)
                                                                                                                               aGTCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACG‑CTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGa   >  1:484440/1‑140 (MQ=255)
                                                                                                                                 tCGCTCACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGaa  >  2:703034/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                      
TGATGAAGGCAAAGAGGGCGTCGGACCAGATTCGTTGCCAGGACGAGGTCGTCGACTCATCACCTTTACAGACAGTCGACAAGGGACAGCCCGAATGGCGGTGCGTATGCAGCAAGAAGCAGAACGCAGTCGCTTACGCGGAAGCGTAGTCGAAATTCTCAGCTGGCATCAAAGGACGCAAACGTCTACAGCGCCGAATGCCAATGCCGATCTGGAAAAATTAGCGGCCAGGGCGAAGCAAGCCCGTGAGCAGGCAGAAGAATATCGAA  >  NC_000913/4574620‑4574888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A