Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 163 52.9 1786516 99.3% 1774010 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,532,018 T→C I68T (ATT→ACT)  ydcC → H repeat‑associated putative transposase YdcC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,532,0180TC95.5% 159.4 / ‑0.1 67I68T (ATT→ACT) ydcCH repeat‑associated putative transposase YdcC
Reads supporting (aligned to +/- strand):  ref base T (1/2);  new base C (28/36);  total (29/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.85e-01

GGAACATAAGTTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAAC  >  NC_000913/1531881‑1532150
                                                                                                                                         |                                                                                                                                    
ggAACATAAGTTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTc                                                                                                                                    >  1:605708/1‑140 (MQ=17)
ggAACATAAGTTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTc                                                                                                                                    >  2:158820/1‑140 (MQ=18)
         gTTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACg                                                                                                                           <  1:667702/140‑1 (MQ=11)
              cGGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACAcc                                                                                                                      <  2:602254/140‑1 (MQ=18)
                 atatTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCAtt                                                                                                                   >  2:446639/1‑140 (MQ=17)
                     tCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCa                                                                                                               <  2:602372/140‑1 (MQ=17)
                       tACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCaga                                                                                                             >  1:588024/1‑140 (MQ=17)
                       tACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCaga                                                                                                             >  2:421839/1‑140 (MQ=17)
                          tGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGtt                                                                                                          <  2:605708/140‑1 (MQ=18)
                          tGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGtt                                                                                                          <  1:793692/140‑1 (MQ=17)
                          tGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGtt                                                                                                          <  1:362790/140‑1 (MQ=17)
                             tGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTa                                                                                                       <  2:174945/140‑1 (MQ=32)
                             tGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTa                                                                                                       <  2:540296/140‑1 (MQ=18)
                              gACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTAt                                                                                                      >  1:35063/1‑140 (MQ=17)
                              gACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTAt                                                                                                      >  1:26347/1‑140 (MQ=17)
                              gACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTAt                                                                                                      >  1:449224/1‑140 (MQ=17)
                               aCTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc                                                                                                     >  2:342927/1‑140 (MQ=32)
                               aCTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGtt                                                                                                          >  2:22801/1‑135 (MQ=17)
                               aCTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGtt                                                                                                          <  1:22801/135‑1 (MQ=17)
                               aCTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATc                                                                                                     >  1:245934/1‑140 (MQ=17)
                               aCTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATc                                                                                                     >  1:199639/1‑140 (MQ=17)
                                   tttGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCa                                                                                                               >  2:257016/1‑126 (MQ=17)
                                   tttGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCa                                                                                                               <  1:257016/126‑1 (MQ=17)
                                    ttGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTa                                                                                                >  1:429805/1‑140 (MQ=17)
                                         ccGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGt                                                                                           >  1:120572/1‑140 (MQ=21)
                                          cGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTc                                                                                          <  2:79551/140‑1 (MQ=25)
                                                   tGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAAt                                                                                 <  2:40972/140‑1 (MQ=37)
                                                    ggTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAAtt                                                                                >  1:543363/1‑140 (MQ=37)
                                                      tGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTc                                                                              >  2:348787/1‑140 (MQ=37)
                                                         aGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACg                                                                           <  2:26347/140‑1 (MQ=37)
                                                          gAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGa                                                                          <  2:192839/140‑1 (MQ=37)
                                                          gAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGa                                                                          <  2:543363/140‑1 (MQ=37)
                                                          gAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGa                                                                          <  2:588024/140‑1 (MQ=37)
                                                          gAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGa                                                                          <  2:724903/140‑1 (MQ=37)
                                                            aGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGt                                                                        <  1:881669/140‑1 (MQ=37)
                                                            aGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGt                                                                        <  2:566780/140‑1 (MQ=37)
                                                            aGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGt                                                                        <  2:408854/140‑1 (MQ=37)
                                                              gCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGc                                                                      <  1:348787/140‑1 (MQ=37)
                                                                  ggAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTtta                                                                  >  1:634376/1‑140 (MQ=25)
                                                                      gATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTaa                                                              <  1:272397/140‑1 (MQ=21)
                                                                        tataGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACt                                                            <  2:472603/140‑1 (MQ=21)
                                                                         ataGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTaa                                                              <  1:807343/137‑1 (MQ=21)
                                                                         ataGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTaa                                                              >  2:807343/1‑137 (MQ=25)
                                                                         ataGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGT‑CTGCAAAATTTCACGAGTGCTTTATTAACTgg                                                          >  2:681454/1‑140 (MQ=255)
                                                                            gagGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGAt                                                        >  2:853604/1‑140 (MQ=25)
                                                                              ggATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGc                                                      <  1:342927/140‑1 (MQ=34)
                                                                                 ttttGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTg                                                   >  1:291105/1‑140 (MQ=25)
                                                                                  tttGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGa                                                  >  1:753244/1‑140 (MQ=25)
                                                                                  tttGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGa                                                  >  2:534856/1‑140 (MQ=25)
                                                                                   ttGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGAc                                                 <  2:449224/140‑1 (MQ=21)
                                                                                   ttGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGAc                                                 <  2:634376/140‑1 (MQ=21)
                                                                                        gAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAAATTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCa                                            <  1:406347/140‑1 (MQ=21)
                                                                                         aaaCACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCAt                                           >  1:588813/1‑140 (MQ=25)
                                                                                             acaTCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCAttctt                                       <  2:35063/140‑1 (MQ=21)
                                                                                              caTCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCAttcttc                                      <  2:716296/140‑1 (MQ=21)
                                                                                                 cccGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAga                                   <  1:417952/140‑1 (MQ=18)
                                                                                                 cccGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAga                                   <  1:534856/140‑1 (MQ=18)
                                                                                                 cccGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAga                                   <  2:291105/140‑1 (MQ=18)
                                                                                                             aaGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGt                       <  1:446639/140‑1 (MQ=17)
                                                                                                             aaGCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGt                       <  1:554884/140‑1 (MQ=17)
                                                                                                               gCAATATGGTGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCa                     <  1:158820/140‑1 (MQ=17)
                                                                                                                        tGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTg            >  2:622136/1‑140 (MQ=18)
                                                                                                                        tGATTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGT‑CTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGa           <  1:681454/140‑1 (MQ=12)
                                                                                                                          aTTTTGAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGAt          >  2:483795/1‑140 (MQ=18)
                                                                                                                               gAAAATGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGaaa     >  1:109088/1‑140 (MQ=18)
                                                                                                                                  aaTGGTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAAc  >  2:845322/1‑140 (MQ=18)
                                                                                                                                      gTACTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAAt              <  1:554851/124‑1 (MQ=17)
                                                                                                                                         |                                                                                                                                    
GGAACATAAGTTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAAC  >  NC_000913/1531881‑1532150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A