Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 163 52.9 1786516 99.3% 1774010 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,988,269 T→C intergenic (+101/‑233) yqeH → / → yqeI putative LuxR family transcriptional regulator YqeH/putative transcriptional regulator YqeI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,988,2690TC97.3% 253.2 / ‑2.3 74intergenic (+101/‑233)yqeH/yqeIputative LuxR family transcriptional regulator YqeH/putative transcriptional regulator YqeI
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (39/33);  total (40/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

TTCGTTCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCAATCATCAT  >  NC_000913/2988143‑2988404
                                                                                                                              |                                                                                                                                       
ttCGTTCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATc                                                                                                                            <  2:531594/140‑1 (MQ=255)
  cGTTCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATcac                                                                                                                          <  1:275584/140‑1 (MQ=255)
   gTTCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATcaca                                                                                                                         >  2:844860/1‑140 (MQ=255)
     tCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACg                                                                                                                       >  1:132730/1‑140 (MQ=255)
     tCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACg                                                                                                                       <  2:554849/140‑1 (MQ=255)
         aTTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCAttt                                                                                                                                     >  1:66034/1‑122 (MQ=255)
         aTTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCAttt                                                                                                                                     <  2:66034/122‑1 (MQ=255)
               tCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAg                                                                                                             <  2:91983/140‑1 (MQ=255)
               tCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAg                                                                                                             <  2:214630/140‑1 (MQ=255)
                         aTACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATGGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACg                                                                                                   >  2:620368/1‑140 (MQ=255)
                         aTACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACg                                                                                                   >  2:234661/1‑140 (MQ=255)
                         aTACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACg                                                                                                   <  1:75130/140‑1 (MQ=255)
                               aaCGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAatat                                                                                             <  2:132730/140‑1 (MQ=255)
                                 cGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGa                                                                                           >  2:259860/1‑140 (MQ=255)
                                     cagccagAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAAttt                                                                                       <  1:431376/140‑1 (MQ=255)
                                     cagccagAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAAttt                                                                                       <  2:881375/140‑1 (MQ=255)
                                       gccagAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCGCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTa                                                                                      >  1:779884/1‑139 (MQ=255)
                                       gccagAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTac                                                                                     >  1:413537/1‑140 (MQ=255)
                                       gccagAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTa                                                                                      <  2:779884/139‑1 (MQ=255)
                                                aTACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAg                                                                            <  2:112650/140‑1 (MQ=255)
                                                   ctctGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTgg                                                                         <  1:259860/140‑1 (MQ=255)
                                                     ctGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCa                                                                       <  2:145284/140‑1 (MQ=255)
                                                     ctGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCa                                                                       <  1:523747/140‑1 (MQ=255)
                                                      tGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCAt                                                                      <  2:165614/140‑1 (MQ=255)
                                                      tGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCAt                                                                      >  1:806855/1‑140 (MQ=255)
                                                      tGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCAt                                                                      >  1:814532/1‑140 (MQ=255)
                                                       gTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTAAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCAt                                                                      <  1:756979/139‑1 (MQ=255)
                                                       gTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTAAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCAt                                                                      >  2:756979/1‑139 (MQ=255)
                                                        tttATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGt                                                                           >  1:100122/1‑133 (MQ=255)
                                                        tttATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGt                                                                           <  2:100122/133‑1 (MQ=255)
                                                        tttATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATaa                                                                    >  1:37208/1‑140 (MQ=255)
                                                          tataCGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAAt                                                                  >  1:729372/1‑140 (MQ=255)
                                                           ataCGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATg                                                                 <  1:209000/140‑1 (MQ=255)
                                                           ataCGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATg                                                                 >  2:255418/1‑140 (MQ=255)
                                                                ggCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAAc                                                            >  1:94755/1‑140 (MQ=255)
                                                                ggCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAAc                                                            >  2:890720/1‑140 (MQ=255)
                                                                  cATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCa                                                          >  1:497350/1‑140 (MQ=255)
                                                                         tGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAAt                                                   <  2:466576/140‑1 (MQ=255)
                                                                           aaaTGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAAttt                                                 >  2:518886/1‑140 (MQ=255)
                                                                                tCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTa                                            <  2:863735/140‑1 (MQ=255)
                                                                                tCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTa                                            >  2:253905/1‑140 (MQ=255)
                                                                                        ttATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTa                                    <  1:844860/140‑1 (MQ=255)
                                                                                          ataAATAGGCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACg                                  <  2:136759/140‑1 (MQ=255)
                                                                                                 ggCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAAc                           >  2:136392/1‑140 (MQ=255)
                                                                                                 ggCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAAc                           >  2:745147/1‑140 (MQ=255)
                                                                                                 ggCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAAc                           >  2:530695/1‑140 (MQ=255)
                                                                                                  gCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACa                          >  2:621486/1‑140 (MQ=255)
                                                                                                  gCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACa                          >  1:286466/1‑140 (MQ=255)
                                                                                                  gCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACa                          >  1:57658/1‑140 (MQ=255)
                                                                                                  gCCGTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACAAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACa                          >  2:140851/1‑140 (MQ=255)
                                                                                                     gTCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTa                       <  2:57658/140‑1 (MQ=255)
                                                                                                      tCCCCTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTaa                      >  1:231636/1‑140 (MQ=255)
                                                                                                          cTCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGcc                  <  2:231636/140‑1 (MQ=255)
                                                                                                           tCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCt                 <  2:128890/140‑1 (MQ=255)
                                                                                                           tCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCt                 <  1:136392/140‑1 (MQ=255)
                                                                                                           tCAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCt                 >  2:396270/1‑140 (MQ=255)
                                                                                                            cAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTc                >  1:369424/1‑140 (MQ=255)
                                                                                                            cAAGAGTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTc                >  2:202190/1‑140 (MQ=255)
                                                                                                              agagTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCAt              <  2:413537/140‑1 (MQ=255)
                                                                                                                agTAAACACCATAGTATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCAttt            >  1:519244/1‑140 (MQ=255)
                                                                                                                agTAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCAttt            >  2:714652/1‑140 (MQ=255)
                                                                                                                  tAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCa          <  2:814532/140‑1 (MQ=255)
                                                                                                                  tAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCa          <  1:518886/140‑1 (MQ=255)
                                                                                                                  tAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCa          <  1:396270/140‑1 (MQ=255)
                                                                                                                  tAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCa          <  2:636205/140‑1 (MQ=255)
                                                                                                                  tAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCa          >  1:636205/1‑140 (MQ=255)
                                                                                                                  tAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCa          >  1:832583/1‑140 (MQ=255)
                                                                                                                  tAAACACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCa          >  2:327014/1‑140 (MQ=255)
                                                                                                                    aaCACCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCAat        >  2:788885/1‑140 (MQ=255)
                                                                                                                       acCATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCAatcat     >  2:664122/1‑140 (MQ=255)
                                                                                                                        ccATAGTATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCAatcatc    <  2:519244/140‑1 (MQ=255)
                                                                                                                        ccATAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTGCGTTGCAACATTAAAGCCTCATTTCAatcatc    <  1:187140/140‑1 (MQ=255)
                                                                                                                          aTAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCAATcatcat  >  1:313941/1‑140 (MQ=255)
                                                                                                                          aTAGCATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCAATcatcat  >  1:126049/1‑140 (MQ=255)
                                                                                                                              |                                                                                                                                       
TTCGTTCACATTCGGTCCAACATTGATACTCAACGACCAGCCAGAATCATACTCTGTTTATACGGGCATTTATTGAAATGTCCGTATTTTATAAATAGGCCGTCCCCTCAAGAGTAAACACCATAGTATTTAAAACCATCACACGAAAAATTCAGAAGCATTACGAAATATGAATTTACAAACAATAGTGGCATAAATGTTAACCATGTTAATTTACGTAAAGTTTTACGTTGCAACATTAAAGCCTCATTTCAATCATCAT  >  NC_000913/2988143‑2988404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A