Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
163 |
52.9 |
1786516 |
99.3% |
1774010 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,565,981 |
(T)7→8 |
coding (601/2448 nt) |
glgP ← |
glycogen phosphorylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,565,974 | 1 | . | T | 95.1%
| 201.5
/ 2.2
| 61 | coding (608/2448 nt) | glgP | glycogen phosphorylase |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base T (29/29); total (30/31) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
CTGGTTGAATTTACCGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑TTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTACCGTTAACGATGTTC > NC_000913/3565835‑3566108
|
cTGGTTGAATTTACCGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGcgcg < 2:481774/140‑1 (MQ=255)
ggTTGAATTTACCGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑tt > 2:57984/1‑140 (MQ=255)
gTTGAATTTACCGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑ttt > 2:850098/1‑140 (MQ=255)
tttACCGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑tttttttta > 2:512281/1‑138 (MQ=255)
aCCGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑ttttttttacct < 2:518958/140‑6 (MQ=255)
ccGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCtt < 1:10217/140‑1 (MQ=255)
ccGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCtt > 2:10217/1‑140 (MQ=255)
cGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTc < 1:683827/140‑1 (MQ=255)
ggTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑ttttttt < 2:820527/130‑1 (MQ=255)
ggTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑ttttttt > 1:820527/1‑130 (MQ=255)
tGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAAc < 1:850098/140‑1 (MQ=255)
tGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAAc < 2:861635/140‑1 (MQ=255)
gcgcACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACg < 1:875851/140‑1 (MQ=255)
cgcACTCCCCAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGGTTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATTCGACCGCCAAAAAgg > 2:316856/1‑140 (MQ=255)
cgcACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACgg < 2:868779/140‑1 (MQ=255)
cgcACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTCCTGAATGCGACCGCCAAAACgg > 2:731451/1‑140 (MQ=255)
gcACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGa < 1:93422/140‑1 (MQ=255)
cACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGAc > 1:295374/1‑140 (MQ=255)
tCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACttt > 2:76357/1‑140 (MQ=255)
ccACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTta > 1:350257/1‑140 (MQ=255)
ccACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTta < 1:57984/140‑1 (MQ=255)
cacaAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTtat > 1:834384/1‑140 (MQ=255)
aaaCGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAgc < 2:837386/140‑1 (MQ=255)
cGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑TTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCgt > 2:548137/1‑140 (MQ=255)
cAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACttt < 2:280221/130‑1 (MQ=255)
cAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACttt > 1:280221/1‑130 (MQ=255)
cAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCgtg > 2:808667/1‑140 (MQ=255)
cAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATACAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCgtg > 2:862275/1‑140 (MQ=255)
gCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGtgtt > 1:854081/1‑140 (MQ=255)
gCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGtgtt > 2:185665/1‑140 (MQ=255)
ttGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGc > 1:156633/1‑140 (MQ=255)
gcgTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGa < 2:156633/140‑1 (MQ=255)
gcgTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGa < 2:168731/140‑1 (MQ=255)
cGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTc > 1:585023/1‑140 (MQ=255)
gtgtCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTTAATTccc < 2:539587/140‑1 (MQ=255)
tgtCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCa < 1:861753/140‑1 (MQ=255)
gTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACggg < 1:878676/140‑1 (MQ=255)
gTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑TTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGt < 1:548137/140‑1 (MQ=255)
gTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATACAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACggg < 1:862275/140‑1 (MQ=255)
tAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGt > 2:704614/1‑140 (MQ=255)
ggATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTa > 2:680815/1‑140 (MQ=255)
ttATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTccc > 1:470857/1‑124 (MQ=255)
ttATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTccc < 2:470857/124‑1 (MQ=255)
tATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTcc < 2:380538/140‑1 (MQ=255)
tATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTcc < 2:854081/140‑1 (MQ=255)
cTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTccagc < 1:76357/140‑1 (MQ=255)
gATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTccagcca < 2:834384/140‑1 (MQ=255)
aTCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTccagccag > 1:779506/1‑140 (MQ=255)
tCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTcc > 1:548016/1‑133 (MQ=255)
tCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTcc < 2:548016/133‑1 (MQ=255)
cgcaaGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTcc < 1:832017/129‑1 (MQ=255)
cGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTcc > 2:832017/1‑132 (MQ=255)
aCTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCg > 2:528325/1‑140 (MQ=255)
aCTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCg > 1:69047/1‑140 (MQ=255)
cTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGa < 1:813553/140‑1 (MQ=255)
cTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGa < 2:779506/140‑1 (MQ=255)
cTCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGa < 1:528325/140‑1 (MQ=255)
tCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGAc > 2:37109/1‑140 (MQ=255)
tCCCAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGAc < 2:776860/140‑1 (MQ=255)
ccAGAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGActc > 2:872103/1‑140 (MQ=255)
gAATCTCTTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCttt < 1:704614/140‑1 (MQ=255)
ctTCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCt < 2:295374/140‑1 (MQ=255)
ttCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTa > 1:202206/1‑140 (MQ=255)
tCGGTTTCAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTAc > 2:530955/1‑140 (MQ=255)
ggTTTCAATCCAGCGCG‑TTTTTTTCCCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTACCGt < 1:128997/140‑1 (MQ=255)
cAATCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTACCGTTAAc > 2:792463/1‑140 (MQ=255)
aTCCAGCGCGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTACCGTTAACGa > 1:108156/1‑140 (MQ=255)
gcgcGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTACCGTTAACGATGTTc > 2:505364/1‑140 (MQ=255)
gcgcGTTTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTACCGTTAACGATGTTc < 1:319725/140‑1 (MQ=255)
|
CTGGTTGAATTTACCGAGGTTAATTTCGCTACTGGCTTGCGCACTCCACAAACGCAGCGTGTTGGTCGCGTCGGTGTCGTAACCAGGGATTATCTGATCGTAAGCGACTCCCAGAATCTCTTCGGTTTCAATCCAGCGCG‑TTTTTTTACCTTCCTGCTGAATGCGACCGCCAAAACGGACTTTATAGCGCGTGTTGTGGCGTTTGAATTCCCACGGGTTACCGTATTCCAGCCAGTAGTCTGGCGACTCTTTCTGGCTACCGTTAACGATGTTC > NC_000913/3565835‑3566108
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
