Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	139,572	T→C	T552A (ACC→GCC)	gcd ←	quinoprotein glucose dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	139,572	0	T	C	100.0%	257.6 / NA	70	T552A (ACC→GCC)	gcd	quinoprotein glucose dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (43/27); total (43/27)

CGGAAATCCCGCCCCATTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGTGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCGGTGCCGGAACCACCA  >  NC_000913/139437‑139706

cGGAAATCCCGCCCCATTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCt                                                                                                                                    <  2:734473/140‑1 (MQ=255)

cGGAAATCCCGCCCCATTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCt                                                                                                                                    <  1:242459/140‑1 (MQ=255)

     aTCCCGCCCCATTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCca                                                                                                                               <  2:482066/140‑1 (MQ=255)

     aTCCCGCCCCATTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCca                                                                                                                               <  1:852119/140‑1 (MQ=255)

     aTCCCGCCCCATTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCca                                                                                                                               <  1:338907/140‑1 (MQ=255)

     aTCCCGCCCCATTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCca                                                                                                                               <  1:252399/140‑1 (MQ=255)

               aTTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCa                                                                                                                     <  1:44501/140‑1 (MQ=255)

                        tCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCaaa                                                                                                            >  2:158771/1‑140 (MQ=255)

                         ccccAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAAt                                                                                                           >  2:949161/1‑140 (MQ=255)

                          cccAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATc                                                                                                          >  1:677826/1‑140 (MQ=255)

                          cccAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATc                                                                                                          >  2:538210/1‑140 (MQ=255)

                               gTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTtcg                                                                                                     >  1:679948/1‑140 (MQ=255)

                                 tACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTtcgtc                                                                                                   >  2:1264968/1‑140 (MQ=255)

                                   cctgggAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTcgg                                                                                                 >  1:274166/4‑140 (MQ=255)

                                   cccGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTcgg                                                                                                 >  2:17284/1‑140 (MQ=255)

                                   cccGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTcgg                                                                                                 >  1:760146/1‑140 (MQ=255)

                                   cccGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTcgg                                                                                                 >  1:859775/1‑140 (MQ=255)

                                   cccGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTcgg                                                                                                 >  2:1095490/1‑140 (MQ=255)

                                   cccGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAACGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTcgg                                                                                                 >  1:1082910/1‑140 (MQ=255)

                                         aaGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGaa                                                                                           >  1:57612/1‑140 (MQ=255)

                                            aCCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCt                                                                                        <  1:17284/140‑1 (MQ=255)

                                            aCCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCt                                                                                        <  2:760146/140‑1 (MQ=255)

                                                 cGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGtt                                                                                   >  1:436050/1‑140 (MQ=255)

                                                        tGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGaaaa                                                                            <  1:1036858/140‑1 (MQ=255)

                                                        tGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCCTTCGTCGGACGGAAGCTCAGTTCAGaaaa                                                                            >  1:1267995/1‑140 (MQ=255)

                                                          ttCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACg                                                                          >  2:408614/1‑140 (MQ=255)

                                                          ttCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACg                                                                          >  1:964919/1‑140 (MQ=255)

                                                           tCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACgg                                                                         >  2:403277/1‑140 (MQ=255)

                                                             aGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGtt                                                                       <  2:274166/140‑1 (MQ=255)

                                                               aTGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGa                                                                     >  1:1120821/1‑140 (MQ=255)

                                                                tGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAg                                                                    <  2:677826/140‑1 (MQ=255)

                                                                    ggggTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTgg                                                                >  1:938239/1‑140 (MQ=255)

                                                                      ggTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTgggg                                                              <  1:538210/140‑1 (MQ=255)

                                                                                ccTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTg                                                                 <  1:287255/127‑1 (MQ=255)

                                                                                ccTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTg                                                                 >  2:287255/1‑127 (MQ=255)

                                                                                 cTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCg                                                   >  1:1058958/1‑140 (MQ=255)

                                                                                   tCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGcc                                                 <  2:1267995/140‑1 (MQ=255)

                                                                                   tCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGcc                                                 <  2:679948/140‑1 (MQ=255)

                                                                                     aTAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCtt                                               >  1:311379/1‑140 (MQ=255)

                                                                                     aTAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCtt                                               >  1:836394/1‑140 (MQ=255)

                                                                                       aGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTc                                             >  1:890385/1‑140 (MQ=255)

                                                                                         cgcATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGc                                           >  1:629444/1‑140 (MQ=255)

                                                                                          gcATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCt                                          <  1:403277/140‑1 (MQ=255)

                                                                                           cATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTg                                         <  2:1120821/140‑1 (MQ=255)

                                                                                           cATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTg                                         <  1:158771/140‑1 (MQ=255)

                                                                                                        aTCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACAGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAAc                            <  2:859775/140‑1 (MQ=255)

                                                                                                         tCACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAAcc                           >  2:77855/1‑140 (MQ=255)

                                                                                                          cACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCg                          >  2:1028438/1‑140 (MQ=255)

                                                                                                          cACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCg                          >  1:729546/1‑140 (MQ=255)

                                                                                                          cACGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCg                          >  2:31509/1‑140 (MQ=255)

                                                                                                           aCGCGGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCgg                         >  1:226102/1‑140 (MQ=255)

                                                                                                            cgcgGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGTACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGt                        >  2:1240651/1‑140 (MQ=255)

                                                                                                            cgcgGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGa                              >  1:386678/1‑134 (MQ=255)

                                                                                                            cgcgGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGa                              <  2:386678/134‑1 (MQ=255)

                                                                                                            cgcgGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGt                        >  1:366004/1‑140 (MQ=255)

                                                                                                            cgcgGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGt                        >  1:119817/1‑140 (MQ=255)

                                                                                                            cgcgGCACACCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGt                        >  1:79941/1‑140 (MQ=255)

                                                                                                                 cacaCCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTc                   >  1:812003/1‑140 (MQ=255)

                                                                                                                 cacaCCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTc                   <  2:729546/140‑1 (MQ=255)

                                                                                                                 cacaCCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTc                   <  2:1082910/140‑1 (MQ=255)

                                                                                                                  acacCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTcc                  >  2:630801/1‑140 (MQ=255)

                                                                                                                  acacCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTcc                  >  1:221237/1‑140 (MQ=255)

                                                                                                                   cacCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCg                 <  2:1017523/140‑1 (MQ=255)

                                                                                                                    acCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCgg                >  1:315650/1‑140 (MQ=255)

                                                                                                                    acCAGTTGGTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCgg                >  2:228460/1‑140 (MQ=255)

                                                                                                                           ggTCAAACATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCGGTGCCGGa         >  1:1258205/1‑140 (MQ=255)

                                                                                                                                aaCATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCGGTGCCGGAaccac    <  1:1264968/140‑1 (MQ=255)

                                                                                                                                aaCATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCGGTGCCGGAaccac    <  1:408614/140‑1 (MQ=255)

                                                                                                                                aaCATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCGGTGCCGGAaccac    >  1:928950/1‑140 (MQ=255)

                                                                                                                                  cATGGCGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCGGTGCCGGAAccacca  <  2:1258205/140‑1 (MQ=255)

CGGAAATCCCGCCCCATTCGAACATCCCCAGGTTACCCGGGAAGACCAGCGTACCCTGTTCAGATGGCGGGGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGCGGCACACCAGTTGGTCAAACATGGTGGCTCCCCACATATCCGCACCGCTCAAATCTTTCGTCGGACGGAAGCTCAGTTCAGAAAACGGTTGAGTTGGGGTTACGTAATCGCCTTTCGCTGCACCTTGGGGAACCGGTTTTTCCGGTGCCGGAACCACCA  >  NC_000913/139437‑139706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A