Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 147,917 G→A intergenic (+47/+27) rpnC → / ← panC recombination‑promoting nuclease RpnC/pantothenate synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913147,9170GA100.0% 279.0 / NA 80intergenic (+47/+27)rpnC/panCrecombination‑promoting nuclease RpnC/pantothenate synthetase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (46/34);  total (46/34)

TTCTGAGTAAAGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCGCCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGAAACTTCCAGCAATGTGTCGG  >  NC_000913/147782‑148053
                                                                                                                                       |                                                                                                                                        
ttctGAGTAAAGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCAt                                                                                                                                      <  1:479171/140‑1 (MQ=255)
     aGTAAAGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGcc                                                                                                                                 >  1:620140/1‑140 (MQ=255)
      gTAAAGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCg                                                                                                                                >  2:693785/1‑140 (MQ=255)
      gTAAAGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCg                                                                                                                                <  2:620140/140‑1 (MQ=255)
      gTAAAGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCg                                                                                                                                <  1:1095048/140‑1 (MQ=255)
      gTAAAGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCg                                                                                                                                >  1:799793/1‑140 (MQ=255)
         aaGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAg                                                                                                                             <  2:1257668/140‑1 (MQ=255)
                 tctcGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGtt                                                                                                                     <  1:1076044/140‑1 (MQ=255)
                 tctcGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGtt                                                                                                                     >  1:597440/1‑140 (MQ=255)
                      ggAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTa                                                                                                                >  2:224867/1‑140 (MQ=255)
                          gACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTAc                                                                                                            >  1:98979/1‑140 (MQ=255)
                                  agagATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTc                                                                                                    <  2:98979/140‑1 (MQ=255)
                                    agaTGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGa                                                                                                  <  1:909032/140‑1 (MQ=255)
                                       tGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCa                                                                                               >  2:557047/1‑140 (MQ=255)
                                        ggCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCAt                                                                                              >  2:968355/1‑140 (MQ=255)
                                         gCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCAtt                                                                                             >  1:343430/1‑140 (MQ=255)
                                         gCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCAtt                                                                                             >  1:236429/1‑140 (MQ=255)
                                          cAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCAttt                                                                                            <  2:597440/140‑1 (MQ=255)
                                           aaaTTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCAtttt                                                                                           >  2:1282906/1‑140 (MQ=255)
                                             aTTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTttgt                                                                                         <  1:1157948/140‑1 (MQ=255)
                                                  ccTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCg                                                                                    >  1:657205/1‑140 (MQ=255)
                                                    tctTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGAt                                                                                  <  1:1282906/140‑1 (MQ=255)
                                                       tGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAg                                                                               <  2:799793/140‑1 (MQ=255)
                                                        gCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAgg                                                                              >  1:824690/1‑140 (MQ=255)
                                                             gaTTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGc                                                                         <  1:214136/140‑1 (MQ=255)
                                                                tGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGAt                                                                                  >  1:1204882/1‑128 (MQ=255)
                                                                tGATAAGGTAATTAACCTTATTTAAGTTACATGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGAt                                                                                  <  2:1204882/128‑1 (MQ=255)
                                                                  aTAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGc                                                                    >  2:804619/1‑140 (MQ=255)
                                                                      ggTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAg                                                                >  2:979892/1‑140 (MQ=255)
                                                                        tAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGcc                                                              >  2:766066/1‑140 (MQ=255)
                                                                        tAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGcc                                                              <  1:132251/140‑1 (MQ=255)
                                                                          aTTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAg                                                            <  1:693785/140‑1 (MQ=255)
                                                                           ttAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAgg                                                           >  2:1112144/1‑140 (MQ=255)
                                                                              aCCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAggcgg                                                        <  1:653869/140‑1 (MQ=255)
                                                                                 ttATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGcc                                                                   >  2:850079/1‑126 (MQ=255)
                                                                                 ttATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGcc                                                                   <  1:850079/126‑1 (MQ=255)
                                                                                 ttATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTa                                                     >  2:928524/1‑140 (MQ=255)
                                                                                 ttATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTa                                                     >  1:580507/1‑140 (MQ=255)
                                                                                 ttATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTa                                                     >  1:89342/1‑140 (MQ=255)
                                                                                 ttATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTa                                                     >  1:1284560/1‑140 (MQ=255)
                                                                                 ttATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTa                                                     <  2:580507/140‑1 (MQ=255)
                                                                                 ttATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTa                                                     >  2:1044518/1‑140 (MQ=255)
                                                                                  tATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTAc                                                    >  2:904879/1‑140 (MQ=255)
                                                                                  tATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTAc                                                    <  1:224867/140‑1 (MQ=255)
                                                                                   aTTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTAcc                                                   <  1:557047/140‑1 (MQ=255)
                                                                                    tttATGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATACCTGGAACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGGTCATTTTGTTGTCGATCAGGCGAGGATAGCCAAGCCAGGCGGCTACCa                                                  <  2:157986/140‑1 (MQ=255)
                                                                                    tttAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCa                                                  >  1:326378/1‑140 (MQ=255)
                                                                                             ccTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTg                                         <  2:657205/140‑1 (MQ=255)
                                                                                              cTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCt                                                      <  2:1219944/126‑1 (MQ=255)
                                                                                              cTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCt                                                      >  1:1219944/1‑126 (MQ=255)
                                                                                              cTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGc                                        <  2:1284560/140‑1 (MQ=255)
                                                                                              cTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGc                                        >  2:490197/1‑140 (MQ=255)
                                                                                                   ttATGACAGATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGtt                                   >  2:658611/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  1:10111/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  1:708063/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           <  1:804619/140‑1 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  1:305017/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  1:1076514/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  2:63494/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  1:1087256/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  1:314685/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  2:116478/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  2:186361/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  1:1149362/1‑140 (MQ=255)
                                                                                                           gATGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGtt                           >  2:544640/1‑140 (MQ=255)
                                                                                                            aTGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGttt                          >  1:1108983/1‑140 (MQ=255)
                                                                                                             tGACGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTc                         >  1:1264269/1‑140 (MQ=255)
                                                                                                               aCGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAg                       <  2:1264269/140‑1 (MQ=255)
                                                                                                               aCGTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAg                       <  2:1087256/140‑1 (MQ=255)
                                                                                                                 gTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGaa                     <  2:824690/140‑1 (MQ=255)
                                                                                                                 gTGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGaa                     <  1:116478/140‑1 (MQ=255)
                                                                                                                  tGGGGTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGaaa                    >  1:465611/1‑140 (MQ=255)
                                                                                                                    gggTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGAAACt                  <  2:465611/140‑1 (MQ=255)
                                                                                                                      gTAAATTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGAAACTTc                <  1:400569/140‑1 (MQ=255)
                                                                                                                         aaTTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGAAACTTCCAg             <  2:708063/140‑1 (MQ=255)
                                                                                                                          aTTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGaa                     >  2:138599/1‑131 (MQ=255)
                                                                                                                          aTTAATAACTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGaa                     <  1:138599/131‑1 (MQ=255)
                                                                                                                               taaCTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGa                      <  2:199243/125‑1 (MQ=255)
                                                                                                                               taaCTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGa                      >  1:199243/1‑125 (MQ=255)
                                                                                                                               taaCTGGCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGAAACTTCCAGCAAtgt       >  1:1194455/1‑140 (MQ=255)
                                                                                                                                    ggCACCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGAAACTTCCAGCAATGTGTCgg  <  1:482508/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TTCTGAGTAAAGGAATGTCTCGGGAAGACGTTGCAGAGATGGCAAATTTACCTCTTGCTGAGATTGATAAGGTAATTAACCTTATTTAAGTTACCTGTGTTATGACAGATGACGTGGGGTAAATTAATAACTGGCGCCATCAGCCGTAGCGCCAGTTAAGTATTACGCCAGCTCGACCATTTTGTTGTCGATCAGGCGAGCATCGCCAAGCCAGGCGGCTACCAGAATTACTGCCCGTTTGCTGGTTTCAGAAACTTCCAGCAATGTGTCGG  >  NC_000913/147782‑148053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A