Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,411,524 G→A A142V (GCG→GTG)  ttcA ← tRNA cytosine(32) 2‑sulfurtransferase TtcA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,411,5240GA100.0% 288.2 / NA 87A142V (GCG→GTG) ttcAtRNA cytosine(32) 2‑sulfurtransferase TtcA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (41/46);  total (41/46)

CGGACGAATAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCGCCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTCAACAATCTTGTACTC  >  NC_000913/1411388‑1411654
                                                                                                                                        |                                                                                                                                  
cGGACGAATAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCAccc                                                                                                                                 >  1:833557/1‑140 (MQ=255)
cGGACGAATAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCAccc                                                                                                                                 >  2:722099/1‑140 (MQ=255)
 ggACGAATAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCAcccc                                                                                                                                <  1:359816/140‑1 (MQ=255)
  gACGAATAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGAGACCCAACGCGATCTTCGTCAccccc                                                                                                                               >  2:667239/1‑140 (MQ=255)
     gAATAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGt                                                                                                                            >  1:88658/1‑140 (MQ=255)
     gAATAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGt                                                                                                                            >  1:140884/1‑140 (MQ=255)
       aTAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGAGACCCAACGCGATCTTCGTCACCCCCAGTTc                                                                                                                          <  1:667239/140‑1 (MQ=255)
            tatatGTTTCCCTACACCGCTCATCAGTTTCGGAGGCATACTTTTCATTTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTg                                                                                                                     <  2:918725/139‑1 (MQ=255)
            gATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTg                                                                                                                     <  2:634578/140‑1 (MQ=255)
              tatGTTTCCAATCATCGCTCATCAGTTTCGGAGGCATACTTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCg                                                                                                                   <  1:45739/140‑1 (MQ=255)
               ttttttGCCATAATCGCTCATCATTTTCGGGGGCATCCTTTTCATTTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCgg                                                                                                                  <  1:641099/137‑1 (MQ=255)
                tGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCg                                                                                                                   >  1:715218/1‑138 (MQ=255)
                tGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCg                                                                                                                   <  2:715218/138‑1 (MQ=255)
                 ttttGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTa                                                                                                                <  2:850817/139‑1 (MQ=255)
                 gTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTa                                                                                                                >  1:1270670/1‑140 (MQ=255)
                 gTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTa                                                                                                                >  2:1135228/1‑140 (MQ=255)
                 gTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTa                                                                                                                <  2:819030/140‑1 (MQ=255)
                  tttGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTa                                                                                                                >  2:827372/1‑139 (MQ=255)
                  tttGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTa                                                                                                                <  1:827372/139‑1 (MQ=255)
                    tGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGa                                                                                                             >  1:101962/1‑140 (MQ=255)
                     gCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGAt                                                                                                            >  2:852042/1‑140 (MQ=255)
                     gCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGAt                                                                                                            <  2:88658/140‑1 (MQ=255)
                     gCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGAt                                                                                                            <  2:140884/140‑1 (MQ=255)
                      ccATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATa                                                                                                           >  2:232435/1‑140 (MQ=255)
                        atcatcGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATaaa                                                                                                         >  2:877875/1‑140 (MQ=255)
                          catcGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAgg                                                                                                       >  1:634631/1‑140 (MQ=255)
                           atcGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACg                                                                                                              <  1:617085/132‑1 (MQ=255)
                           atcGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACg                                                                                                              >  2:617085/1‑132 (MQ=255)
                                     gttttCGGAGTCATCCCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGcgacg                                                                                            <  2:915864/138‑1 (MQ=255)
                                     ggTTTGGGAGGAATACCTTTAATCTCACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGcgacg                                                                                            <  1:864299/139‑1 (MQ=255)
                                     aGTTTCGGAGGCATCCCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGcgacg                                                                                            <  2:147493/140‑1 (MQ=255)
                                       tttCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGaa                                                                                          >  1:365970/1‑140 (MQ=255)
                                         tCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAgg                                                                                        >  1:892730/1‑140 (MQ=255)
                                          cGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGc                                                                                       >  1:158976/1‑140 (MQ=255)
                                               gCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGaa                                                                                  <  1:71485/140‑1 (MQ=255)
                                                 aTACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGATCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAaca                                                                                >  1:232367/1‑140 (MQ=255)
                                                 aTACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAaca                                                                                <  1:1135228/140‑1 (MQ=255)
                                                 aTACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAaca                                                                                >  2:1098693/1‑140 (MQ=255)
                                                      tttCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTg                                                                           >  2:39157/1‑140 (MQ=255)
                                                       ttCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGa                                                                          <  2:124313/140‑1 (MQ=255)
                                                               aCCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTgg                                                                  >  2:811213/1‑140 (MQ=255)
                                                               aCCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTgg                                                                  >  2:1120107/1‑140 (MQ=255)
                                                                 cgccgTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAg                                                                     <  1:944263/135‑1 (MQ=255)
                                                                 cgccgTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAg                                                                     >  2:944263/1‑135 (MQ=255)
                                                                   ccgTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGtttt                                                              >  2:381874/1‑140 (MQ=255)
                                                                    cgTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTg                                                             >  1:493615/1‑140 (MQ=255)
                                                                    cgTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTg                                                             >  1:1238268/1‑140 (MQ=255)
                                                                     gTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGc                                                            <  1:722099/140‑1 (MQ=255)
                                                                     gTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGc                                                            <  1:724284/140‑1 (MQ=255)
                                                                     gTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGc                                                            <  1:811213/140‑1 (MQ=255)
                                                                      tAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGcc                                                           <  2:833557/140‑1 (MQ=255)
                                                                      tAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGcc                                                           >  1:1090322/1‑140 (MQ=255)
                                                                      tAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGcc                                                           >  1:343503/1‑140 (MQ=255)
                                                                           cATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGATCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTg                                                      <  2:232367/140‑1 (MQ=255)
                                                                           cATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTg                                                      <  2:1270670/140‑1 (MQ=255)
                                                                              atTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGaa                                                   <  1:877875/140‑1 (MQ=255)
                                                                              atTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGaa                                                   >  2:451439/1‑140 (MQ=255)
                                                                                ttAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAAtc                                                 <  2:158976/140‑1 (MQ=255)
                                                                                ttAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAAtc                                                 >  2:1191406/1‑140 (MQ=255)
                                                                                ttAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAAtc                                                 <  1:219009/140‑1 (MQ=255)
                                                                                   aGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAAtcttc                                              >  1:295319/1‑140 (MQ=255)
                                                                                     aacaacGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTtctc                                            >  1:768283/1‑140 (MQ=255)
                                                                                     aacaacGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTtctc                                            >  2:1168779/1‑140 (MQ=255)
                                                                                          cGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCa                                       >  2:639572/1‑140 (MQ=255)
                                                                                           gTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCAc                                      <  1:39157/140‑1 (MQ=255)
                                                                                            tttGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACg                                     <  2:431871/140‑1 (MQ=255)
                                                                                             ttGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGa                                    <  2:295319/140‑1 (MQ=255)
                                                                                                cAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATAc                                 <  2:101962/140‑1 (MQ=255)
                                                                                                cAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATAc                                 <  1:615081/140‑1 (MQ=255)
                                                                                                cAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATAc                                 <  1:72465/140‑1 (MQ=255)
                                                                                                cAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATAc                                 <  2:892730/140‑1 (MQ=255)
                                                                                                  ggATATCGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCg                               <  2:768283/140‑1 (MQ=255)
                                                                                                        cGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTa                         <  1:1168779/140‑1 (MQ=255)
                                                                                                        cGTCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTa                         >  2:1288874/1‑140 (MQ=255)
                                                                                                          tCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTAtt                       <  2:271447/140‑1 (MQ=255)
                                                                                                          tCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTAtt                       <  2:1090322/140‑1 (MQ=255)
                                                                                                          tCACGATGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTAtt                       <  1:1191406/140‑1 (MQ=255)
                                                                                                               aTGGTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCtt                  >  1:92260/1‑140 (MQ=255)
                                                                                                                  gTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTcaa               <  2:634631/140‑1 (MQ=255)
                                                                                                                  gTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTcaa               <  1:639572/140‑1 (MQ=255)
                                                                                                                  gTGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTcaa               <  1:451439/140‑1 (MQ=255)
                                                                                                                   tGACCCAACGCGATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTcaac              <  2:92260/140‑1 (MQ=255)
                                                                                                                           cgcgATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTCAACAATCTTGt      >  2:358688/1‑140 (MQ=255)
                                                                                                                           cgcgATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTCAACAATCTTGt      >  2:324933/1‑140 (MQ=255)
                                                                                                                            gcgATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTCAACAATCTTGTa     >  1:741828/1‑140 (MQ=255)
                                                                                                                            gcgATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTCAACAATCTTGTa     >  1:773988/1‑140 (MQ=255)
                                                                                                                              gATCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTCAACAATCTTGTACt   <  1:1288874/140‑1 (MQ=255)
                                                                                                                               aTCTTCGTCACCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTCAACAATCTTGTACTc  <  1:852042/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                  
CGGACGAATAACGATATGTTTGCCATCATCGCTCATCAGTTTCGGAGGCATACCTTTCATCTTACCGCCGTAGAACATATTTAAGAACAACGTTTGCAGGATATCGTCACGATGGTGACCCAACGCGATCTTCGTCGCCCCCAGTTCCGTTGCGGTACGATAAAGGATACCGCGACGAAGGCGAGAACACAGTGAGCAAGTGGTTTTGCCCTCTGGAATCTTCTCTTTCACGATACCGTAAGTATTCTCTTCAACAATCTTGTACTC  >  NC_000913/1411388‑1411654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A