Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,458,356 G→A M31I (ATG→ATA)  paaG → putative ring 1,2‑epoxyphenylacetyl‑CoA isomerase (oxepin‑CoA forming)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,458,3560GA100.0% 230.3 / NA 67M31I (ATG→ATA) paaGputative ring 1,2‑epoxyphenylacetyl‑CoA isomerase (oxepin‑CoA forming)
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (34/33);  total (34/33)

CTTTCTTACAAAAACGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATGCACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTGATCCCACAGGCCCC  >  NC_000913/1458224‑1458491
                                                                                                                                    |                                                                                                                                       
cTTTCTTACAAAAACGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATacacgcac                                                                                                                                  >  2:754197/1‑140 (MQ=255)
cTTTCTTACAAAAACGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATacacgcac                                                                                                                                  <  1:754197/140‑1 (MQ=255)
        cAAAAACGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATacacg                                                                                                                                     >  2:184678/1‑129 (MQ=255)
        cAAAAACGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATacacg                                                                                                                                     <  1:184678/129‑1 (MQ=255)
        cAAAAACGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCa                                                                                                                          <  2:1071809/140‑1 (MQ=255)
         aaaaaCGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCag                                                                                                                         <  2:843346/140‑1 (MQ=255)
          aaaaCGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCaga                                                                                                                        <  1:415060/140‑1 (MQ=255)
                        aCTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAgg                                                                                                          >  1:1049225/1‑140 (MQ=255)
                         cTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGt                                                                                                         >  1:755329/1‑140 (MQ=255)
                                  aCGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGcga                                                                                                <  1:1039406/140‑1 (MQ=255)
                                   cGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGcgac                                                                                               >  1:1154556/1‑140 (MQ=255)
                                       aaTGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGaca                                                                                           >  2:490870/1‑140 (MQ=255)
                                           atgGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTAt                                                                                       >  1:1046297/1‑140 (MQ=255)
                                           atgGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTAt                                                                                       >  1:1153568/1‑140 (MQ=255)
                                              gAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCg                                                                                    >  1:1094672/1‑140 (MQ=255)
                                                  tCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGc                                                                                <  2:368759/140‑1 (MQ=255)
                                                  tCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGc                                                                                <  2:1046297/140‑1 (MQ=255)
                                                  tCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGc                                                                                <  2:33805/140‑1 (MQ=255)
                                                    aTCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACGACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCt                                                                              >  2:763688/1‑140 (MQ=255)
                                                    aTCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCt                                                                              >  2:208635/1‑140 (MQ=255)
                                                     tCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTg                                                                             <  1:1258983/140‑1 (MQ=255)
                                                        tCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGtta                                                                          <  1:705229/140‑1 (MQ=255)
                                                           gTCATGTAGAAAAGGGCGTGATGACACT‑ACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGttactta                                                                      >  1:979821/1‑140 (MQ=255)
                                                            tCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGttactta                                                                      >  2:182743/1‑140 (MQ=255)
                                                              aTGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACa                                                                    >  2:962141/1‑140 (MQ=255)
                                                                   gAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGc                                                               <  1:962141/140‑1 (MQ=255)
                                                                      aaGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCgg                                                            >  2:11656/1‑140 (MQ=255)
                                                                      aaGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCgg                                                            >  1:1123912/1‑140 (MQ=255)
                                                                      aaGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCgg                                                            >  2:1001001/1‑140 (MQ=255)
                                                                       aGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCggg                                                           <  2:1094672/140‑1 (MQ=255)
                                                                         ggCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGgcg                                                         >  2:1137376/1‑140 (MQ=255)
                                                                         ggCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGgcg                                                         >  1:478858/1‑140 (MQ=255)
                                                                         ggCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGgcg                                                         >  1:453954/1‑140 (MQ=255)
                                                                          gCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGgcgc                                                        >  1:925567/1‑140 (MQ=255)
                                                                          gCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGgcgc                                                        <  2:1248782/140‑1 (MQ=255)
                                                                           cGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGttactta                                                                      <  2:346628/125‑1 (MQ=255)
                                                                           cGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGttactta                                                                      >  1:346628/1‑125 (MQ=255)
                                                                           cGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGcgcg                                                       >  2:173028/1‑140 (MQ=255)
                                                                           cGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGcgcg                                                       >  2:447125/1‑140 (MQ=255)
                                                                           cGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGcgcg                                                       >  1:753087/1‑140 (MQ=255)
                                                                              gatgaCACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGAt                                                    >  2:1045177/1‑140 (MQ=255)
                                                                               atgaCACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGAtt                                                   <  2:1049225/140‑1 (MQ=255)
                                                                               atgaCACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGAtt                                                   <  2:588077/140‑1 (MQ=255)
                                                                                   cacTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTtgt                                               >  2:1068938/1‑140 (MQ=255)
                                                                                    acTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACTCGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTtgtg                                              <  2:1153568/140‑1 (MQ=255)
                                                                                    acTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTtgtg                                              >  2:1112447/1‑140 (MQ=255)
                                                                                    acTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTtgtg                                              <  2:856487/140‑1 (MQ=255)
                                                                                    acTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTCGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTtgtg                                              <  2:1154556/140‑1 (MQ=255)
                                                                                     cTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGc                                             <  1:492191/140‑1 (MQ=255)
                                                                                        aCGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTgg                                          >  1:554830/1‑140 (MQ=255)
                                                                                         cGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGt                                         <  1:763688/140‑1 (MQ=255)
                                                                                         cGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGt                                         <  1:447125/140‑1 (MQ=255)
                                                                                         cGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGt                                         <  1:1112447/140‑1 (MQ=255)
                                                                                           cTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCa                                       <  2:554830/140‑1 (MQ=255)
                                                                                           cTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCa                                       <  2:753087/140‑1 (MQ=255)
                                                                                           cTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCa                                       <  2:979821/140‑1 (MQ=255)
                                                                                             cAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAgg                                     <  2:453954/140‑1 (MQ=255)
                                                                                                    ccGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCa                                       <  1:1104888/131‑1 (MQ=255)
                                                                                                    ccGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCa                                       >  2:1104888/1‑131 (MQ=255)
                                                                                                     cGGAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAAc                             <  1:490870/140‑1 (MQ=255)
                                                                                                       gAACGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGa                           <  1:182743/140‑1 (MQ=255)
                                                                                                          cGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGt                                         <  1:866668/123‑1 (MQ=255)
                                                                                                          cGCCTGAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGt                                         >  2:866668/1‑123 (MQ=255)
                                                                                                               gAACAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACg                   <  2:350146/140‑1 (MQ=255)
                                                                                                                  cAGTTTTAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTg                <  1:1137376/140‑1 (MQ=255)
                                                                                                                       ttAATGATGAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTGATccc           >  2:538932/1‑140 (MQ=255)
                                                                                                                          atgatgAGATACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTGATCCcaca        >  2:666699/1‑140 (MQ=255)
                                                                                                                               gagaTACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTGATCCCACAGGccc   >  2:368025/1‑140 (MQ=255)
                                                                                                                               gagaTACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTGATCCCACAGGccc   >  2:223466/1‑140 (MQ=255)
                                                                                                                               gagaTACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTGATCCCACAGGccc   >  2:910939/1‑140 (MQ=255)
                                                                                                                                agaTACACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTGATCCCACAGGcccc  <  2:1123912/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                       
CTTTCTTACAAAAACGCACGCCCGACTTTAAAGGACGCTAATGATGGAATTCATCCTCAGTCATGTAGAAAAGGGCGTGATGACACTAACGCTCAACCGCCCGGAACGCCTGAACAGTTTTAATGATGAGATGCACGCACAACTGGCAGAGTGCCTGAAACAGGTCGAGCGCGACGACACTATCCGTTGCCTGTTACTTACAGGTGCCGGGCGCGGATTTTGTGCTGGTCAGGATCTTAACGATCGTAACGTTGATCCCACAGGCCCC  >  NC_000913/1458224‑1458491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A