Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,511,651 A→G S352S (AGT→AGC)  mntH ← Mn(2(+))/Fe(2(+)): H(+) symporter MntH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,511,6510AG100.0% 237.9 / NA 65S352S (AGT→AGC) mntHMn(2(+))/Fe(2(+)): H(+) symporter MntH
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (27/38);  total (27/38)

CGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGT  >  NC_000913/2511515‑2511786
                                                                                                                                        |                                                                                                                                       
cGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTc                                                                                                                                      >  1:993128/1‑140 (MQ=255)
cGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTc                                                                                                                                      >  2:1181634/1‑140 (MQ=255)
 gACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCa                                                                                                                                     <  2:115442/140‑1 (MQ=255)
 gACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCa                                                                                                                                     <  2:749490/140‑1 (MQ=255)
           acaATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAAt                                                                                                                           <  2:261393/140‑1 (MQ=255)
             aaTCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATcc                                                                                                                         <  2:171048/140‑1 (MQ=255)
                 aCCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCgtgt                                                                                                                     <  1:626339/140‑1 (MQ=255)
                  cccAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTc                                                                                                                    <  1:332799/140‑1 (MQ=255)
                  cccAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTc                                                                                                                    >  1:85703/1‑140 (MQ=255)
                    cAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCgg                                                                                                                  >  2:233336/1‑140 (MQ=255)
                    cAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCgg                                                                                                                  >  2:836468/1‑140 (MQ=255)
                       ccTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATc                                                                                                               >  1:447157/1‑140 (MQ=255)
                       ccTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACATGGCTCATAACCAGAATCCGTGTCGGATc                                                                                                               >  2:193384/1‑140 (MQ=255)
                         tgtctgtTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTa                                                                                                             >  1:403273/1‑140 (MQ=255)
                           tctgtTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATATCCAGAATCCgtgt                                                                                                                     >  2:864428/1‑130 (MQ=255)
                           tctgtTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATATCCAGAATCCgtgt                                                                                                                     <  1:864428/130‑1 (MQ=255)
                           tctgtTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAAt                                                                                                           >  2:1247335/1‑140 (MQ=255)
                           tctgtTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAAt                                                                                                           >  1:116468/1‑140 (MQ=255)
                           tctgtTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAAt                                                                                                           >  1:439264/1‑140 (MQ=255)
                           tcggtTTTAGGCGTTTGCTGTCCCCAAGATCGCCCACAAACTTGCTGTAACTGTTGAAAATCAGCAGGGGAACCAGCGCCGGAGCAAAACCAAACCTT‑ACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATc                                                                                                          <  2:322512/137‑1 (MQ=255)
                              gtTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATccc                                                                                                        <  2:675331/140‑1 (MQ=255)
                                tttACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCAt                                                                                                      <  2:403273/140‑1 (MQ=255)
                                      cgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAAt                                                                                                <  2:97009/140‑1 (MQ=255)
                                      cgTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAAt                                                                                                <  2:593941/140‑1 (MQ=255)
                                           gCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACaa                                                                                           <  2:513244/140‑1 (MQ=255)
                                                      gATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGc                                                                                <  2:512371/140‑1 (MQ=255)
                                                      gATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGc                                                                                <  1:836468/140‑1 (MQ=255)
                                                      gATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGc                                                                                <  1:233336/140‑1 (MQ=255)
                                                        tCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCaa                                                                              <  2:885657/140‑1 (MQ=255)
                                                         cGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGGCAATAAATGACGGCAAc                                                                             >  2:603790/1‑140 (MQ=255)
                                                         cGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAAc                                                                             >  1:918973/1‑140 (MQ=255)
                                                           cccATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGc                                                                                <  1:74562/135‑1 (MQ=255)
                                                           cccATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGc                                                                                >  2:74562/1‑135 (MQ=255)
                                                           cccATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACAt                                                                           <  2:369584/140‑1 (MQ=255)
                                                            ccATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATg                                                                          >  1:1232655/1‑140 (MQ=255)
                                                            ccATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATg                                                                          <  2:918973/140‑1 (MQ=255)
                                                                    ttGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGt                                                                  <  1:1247335/140‑1 (MQ=255)
                                                                      gCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTac                                                                <  1:276152/140‑1 (MQ=255)
                                                                         gTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTacgac                                                             >  1:423786/1‑140 (MQ=255)
                                                                          tCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGt                                                                        <  1:917892/128‑1 (MQ=255)
                                                                          tCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGt                                                                        >  2:917892/1‑128 (MQ=255)
                                                                          tCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTacgacg                                                            <  2:1232655/140‑1 (MQ=255)
                                                                            aCTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCa                                                          >  2:258073/1‑140 (MQ=255)
                                                                                gTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCca                                                      >  1:181828/1‑140 (MQ=255)
                                                                                 tGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCcac                                                     >  2:651142/1‑140 (MQ=255)
                                                                                   aaaaTCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAg                                                   <  2:993128/140‑1 (MQ=255)
                                                                                   aaaaTCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAg                                                   <  2:439264/140‑1 (MQ=255)
                                                                                   aaaaTCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAg                                                   <  2:423786/140‑1 (MQ=255)
                                                                                   aaaaTCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAg                                                   <  2:116468/140‑1 (MQ=255)
                                                                                       tCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCggg                                               <  2:987836/140‑1 (MQ=255)
                                                                                                    cAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGaa                                  <  2:445662/140‑1 (MQ=255)
                                                                                                      gcgcCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATg                                <  2:637708/140‑1 (MQ=255)
                                                                                                       cgcCAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGa                               <  2:1056571/140‑1 (MQ=255)
                                                                                                         ccAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAg                             <  2:85703/140‑1 (MQ=255)
                                                                                                          cAGAGCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGc                            <  1:193384/140‑1 (MQ=255)
                                                                                                           agagCGATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGcc                           >  1:1026638/1‑140 (MQ=255)
                                                                                                                gATACCAAAACTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCa                      <  1:1181634/140‑1 (MQ=255)
                                                                                                                      aaaaCTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATcacca                <  1:651142/140‑1 (MQ=255)
                                                                                                                      aaaaCTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATcacca                <  1:258073/140‑1 (MQ=255)
                                                                                                                         aCTTAACAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCt             >  1:192746/1‑140 (MQ=255)
                                                                                                                             aaCAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCt                         >  2:253255/1‑124 (MQ=255)
                                                                                                                             aaCAGTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCt                         <  1:253255/124‑1 (MQ=255)
                                                                                                                                 gTACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGcc     >  1:807464/1‑140 (MQ=255)
                                                                                                                                  tACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCa    >  2:163514/1‑140 (MQ=255)
                                                                                                                                  tACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCa    >  1:898077/1‑140 (MQ=255)
                                                                                                                                  tACCTGGCTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCa    >  1:545193/1‑140 (MQ=255)
                                                                                                                                    ccTGGCTCATAACCAGAATCCGTGTCGGATCTAACCCCATCAGAATGACAAAAAATGACGGCAACATGGTGACTGTACGCCGCCCCCACAGCGGAATATAAAAGCAAATGAACCCCTGCACCCCCCCCTGCCCCGCCAgt  <  2:447157/140‑1 (MQ=255)
                                                                                                                                    ccTGGCTCATAACCAAAATCCGTGTCGGATCTAACCCCATAAAAATGAAAAAAAATGCCGGCAACATGGTGACTGTACGCCCCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCCCCCCCTGCCCCGCCAgt  <  2:213725/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CGACCAGCACCACAATCACCCAGCCTGTCTGTTTTACGCGTTTGCTGTTCACCAGATCGCCCATCAACTTGCTGTCACTGGTGAAAATCAGCAGTGGAACCAGCGCCAGAGCGATACCAAAACTTAACAGTACCTGACTCATAACCAGAATCCGTGTCGGATCTAATCCCATCAGAATGACAATAAATGACGGCAACATGGTGACTGTACGACGCACCCACAGCGGGATATGAAAGCGAATGAAGCCCTGCATCACCACCTGCCCCGCCAGT  >  NC_000913/2511515‑2511786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A