Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,524,895	T→C	intergenic (‑17/‑232)	xapA ← / → yfeN	xanthosine phosphorylase/conserved outer membrane protein YfeN

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,524,895	0	T	C	98.8%	307.2 / ‑6.4	84	intergenic (‑17/‑232)	xapA/yfeN	xanthosine phosphorylase/conserved outer membrane protein YfeN
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (50/33); total (50/34)
Fisher's exact test for biased strand distribution p-value = 4.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCGGCCAGCGCGCCGAGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGTAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGTAT  >  NC_000913/2524756‑2525029

aTCGGCCAGCGCGCCGAGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGt                                                                                                                                        <  1:13084/140‑1 (MQ=255)

   ggCCAGCGCGCCGAGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAgg                                                                                                                                     <  2:615210/140‑1 (MQ=255)

    gCCAGCGCGCCGAGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAggg                                                                                                                                    >  2:878391/1‑140 (MQ=255)

       cgcgcgcCGAGCCCGGAACCTAAAATAAAGGCCCCTCGTTGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACCGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGTAGGGTgg                                                                                                                                 <  2:1131427/139‑1 (MQ=255)

       aGCGCGCCGAGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTgg                                                                                                                                 <  2:374436/140‑1 (MQ=255)

         cgcgcCGAGCCCGGAACCTAAAATAAAAGCCACTCTTGGCGTGAAATCAGGTTTATAAGCCTTCATAATATCTATGCAAAACAGCGGGGTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGAGGaa                                                                                                                               >  2:513356/1‑140 (MQ=255)

          gcgcCGAGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAAt                                                                                                                              >  1:1017889/1‑140 (MQ=255)

              cGAGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTaa                                                                                                                          <  2:295871/140‑1 (MQ=255)

                aGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACg                                                                                                                        <  1:1052777/140‑1 (MQ=255)

                  cccGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGcc                                                                                                                      <  2:403833/140‑1 (MQ=255)

                               aTAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAg                                                                                                         <  1:665172/140‑1 (MQ=255)

                                   aGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTg                                                                                                     >  1:721818/1‑140 (MQ=255)

                                   aGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTg                                                                                                     >  1:399585/1‑140 (MQ=255)

                                   aGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTg                                                                                                     >  1:275221/1‑140 (MQ=255)

                                    ggCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGt                                                                                                    >  1:962892/1‑140 (MQ=255)

                                    ggCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGt                                                                                                    >  1:1143493/1‑140 (MQ=255)

                                         cTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCgg                                                                                               <  2:399585/140‑1 (MQ=255)

                                          tCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGc                                                                                              >  1:385688/1‑140 (MQ=255)

                                           cGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGct                                                                                             <  2:304090/140‑1 (MQ=255)

                                           cGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGct                                                                                             <  2:1146973/140‑1 (MQ=255)

                                             tGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGctct                                                                                           <  1:256328/140‑1 (MQ=255)

                                               gCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTa                                                                                         >  1:524411/1‑140 (MQ=255)

                                               gCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTa                                                                                         >  2:1238144/1‑140 (MQ=255)

                                               gCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTa                                                                                         >  1:985419/1‑140 (MQ=255)

                                                cGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTAc                                                                                        <  2:962892/140‑1 (MQ=255)

                                                    aaaTCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAAt                                                                                    >  1:17037/1‑140 (MQ=255)

                                                    aaaTCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAAt                                                                                    >  1:737192/1‑140 (MQ=255)

                                                    aaaTCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAAt                                                                                    >  1:1227102/1‑140 (MQ=255)

                                                    aaaTCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAAt                                                                                    >  2:1229832/1‑140 (MQ=255)

                                                    aaaTCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAAt                                                                                    >  2:154156/1‑140 (MQ=255)

                                                           gTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACttt                                                                             >  1:345668/1‑140 (MQ=255)

                                                               ataAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTtctc                                                                         <  1:886386/140‑1 (MQ=255)

                                                                taAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCa                                                                        >  2:495502/1‑140 (MQ=255)

                                                                 aaGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCAc                                                                       <  1:893440/140‑1 (MQ=255)

                                                                 aaGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCAc                                                                       <  2:524411/140‑1 (MQ=255)

                                                                 aaGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCAc                                                                       <  2:985419/140‑1 (MQ=255)

                                                                  aGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACg                                                                      <  1:1229832/140‑1 (MQ=255)

                                                                      ttGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCAtt                                                                  <  1:1277935/140‑1 (MQ=255)

                                                                      ttGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCAtt                                                                  >  1:482114/1‑140 (MQ=255)

                                                                      ttGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACACAtt                                                                  <  2:970692/140‑1 (MQ=255)

                                                                      ttGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACACAtt                                                                  >  1:1272410/1‑140 (MQ=255)

                                                                       tGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTc                                                                 >  1:895449/1‑140 (MQ=255)

                                                                        gATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTtctc                                                                         <  2:955793/131‑1 (MQ=255)

                                                                        gATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTtctc                                                                         >  1:955793/1‑131 (MQ=255)

                                                                           aataTCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATa                                                             >  1:144727/1‑140 (MQ=255)

                                                                                cTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGAt                                                        >  2:176893/1‑140 (MQ=255)

                                                                                   tGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCa                                                                    <  1:744984/125‑1 (MQ=255)

                                                                                   tGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCa                                                                    >  2:744984/1‑125 (MQ=255)

                                                                                   tGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCg                                                     >  1:1116552/1‑140 (MQ=255)

                                                                                   tGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCg                                                     >  2:399701/1‑140 (MQ=255)

                                                                                   tGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCg                                                     <  2:1021215/140‑1 (MQ=255)

                                                                                     cAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGat                                                   >  1:650734/1‑140 (MQ=255)

                                                                                        aaCAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAg                                                            >  1:290952/1‑128 (MQ=255)

                                                                                        aaCAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAg                                                            <  2:290952/128‑1 (MQ=255)

                                                                                        aaCAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATc                                                >  1:1177291/1‑140 (MQ=255)

                                                                                        aaCAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATc                                                >  2:665248/1‑140 (MQ=255)

                                                                                         aCAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGAtt                                                       >  1:383809/1‑132 (MQ=255)

                                                                                         aCAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGAtt                                                       <  2:383809/132‑1 (MQ=255)

                                                                                          cAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGa                                              <  1:1238144/140‑1 (MQ=255)

                                                                                           aGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGAt                                             <  1:355282/140‑1 (MQ=255)

                                                                                             cGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATgg                                           >  2:970802/1‑140 (MQ=255)

                                                                                             cGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATgg                                           >  1:1089567/1‑140 (MQ=255)

                                                                                             cGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGAAgg                                           >  2:1113517/1‑140 (MQ=255)

                                                                                                    tGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTtata                                    >  1:643830/1‑140 (MQ=255)

                                                                                                          aaTTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCtttt                              <  1:154156/140‑1 (MQ=255)

                                                                                                          aaTTGAACCTGAGACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCtttt                              <  2:1227102/140‑1 (MQ=255)

                                                                                                          aaTTGAACCTGAAACATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCtttt                              >  2:783707/1‑140 (MQ=255)

                                                                                                                      gaCATACATATCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATcc                  <  2:643830/140‑1 (MQ=255)

                                                                                                                         atacataTCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACg               <  1:176893/140‑1 (MQ=255)

                                                                                                                              tatCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTaaa          >  2:1042163/1‑140 (MQ=255)

                                                                                                                              tatCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTaaa          >  2:551187/1‑140 (MQ=255)

                                                                                                                              tatCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTaaa          <  1:970802/140‑1 (MQ=255)

                                                                                                                               atCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTaaaa         >  1:708619/1‑140 (MQ=255)

                                                                                                                               atCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTaaaa         >  2:956480/1‑140 (MQ=255)

                                                                                                                               atCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTaaaa         >  2:777947/1‑140 (MQ=255)

                                                                                                                               atCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTaaaa         >  1:393573/1‑140 (MQ=255)

                                                                                                                                tCCTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTaaaaa        <  1:495502/140‑1 (MQ=255)

                                                                                                                                 ccTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGt             >  1:323531/1‑134 (MQ=255)

                                                                                                                                 ccTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGt             <  2:323531/134‑1 (MQ=255)

                                                                                                                                 ccTTTTTCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAAc       >  1:200440/1‑140 (MQ=255)

                                                                                                                                    ttttCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGt    >  2:15910/1‑140 (MQ=255)

                                                                                                                                    ttttCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGt    >  1:648223/1‑140 (MQ=255)

                                                                                                                                     tttCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGTa   >  1:90757/1‑140 (MQ=255)

                                                                                                                                     tttCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGTa   >  2:780305/1‑140 (MQ=255)

                                                                                                                                     tttCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGTa   <  1:1113517/140‑1 (MQ=255)

                                                                                                                                     tttCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGTa   <  1:780305/140‑1 (MQ=255)

                                                                                                                                      ttCTGCAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGTAt  >  1:76828/1‑140 (MQ=255)

ATCGGCCAGCGCGCCGAGCCCGGAACCTAAAATAAAGGCCACTCGTGGCGTGAAATCAGGTTTATAAGTCTTGATAATATCTATGCAAAACAGCGGGTTATGAGAAAATTGAACCTGAGACATACATATCCTTTTTCTGTAGGGTGGAATCTAACGCCTTTTTATAGCGAGGTTGTCCCGGCTCTTACCAATACACTTTTCTCACGCATTCAATAGCGATTCGATATCGATGGATTTATATCTTTTCTCTATTAATCCACGGTAAAAACTGTAT  >  NC_000913/2524756‑2525029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A