Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,558,974 T→C G39G (GGT→GGC)  intZ → CPZ‑55 prophage; putative phage integrase IntZ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,558,9740TC100.0% 274.5 / NA 75G39G (GGT→GGC) intZCPZ‑55 prophage; putative phage integrase IntZ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/36);  total (39/36)

GTTAAATCAAGGTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATT  >  NC_000913/2558837‑2559109
                                                                                                                                         |                                                                                                                                       
gTTAAATCAAGGTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTc                                                                                                                                       >  2:241275/1‑140 (MQ=255)
gTTAAATCAAGGTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTc                                                                                                                                       >  1:449540/1‑140 (MQ=255)
 ttAAATCAAGGTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCg                                                                                                                                      <  1:206237/140‑1 (MQ=255)
   aaaTCAAGGTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGaa                                                                                                                                    >  1:1209554/1‑140 (MQ=255)
        aaGGTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACt                                                                                                                               >  2:694336/1‑140 (MQ=255)
        aaGGTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACt                                                                                                                               <  2:449540/140‑1 (MQ=255)
          ggTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTgg                                                                                                                             <  2:1209554/140‑1 (MQ=255)
           gTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGc                                                                                                                            <  1:57541/140‑1 (MQ=255)
              tCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTg                                                                                                                              <  2:901194/135‑1 (MQ=255)
              tCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTg                                                                                                                              >  1:901194/1‑135 (MQ=255)
               ccGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTc                                                                                                                                       >  1:1162708/1‑125 (MQ=255)
               ccGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGAtt                                                                                                                        <  1:692734/140‑1 (MQ=255)
                    tttGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGt                                                                                                                   >  2:885306/1‑140 (MQ=255)
                    tttGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGt                                                                                                                   >  1:1059146/1‑140 (MQ=255)
                    tttGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGt                                                                                                                   <  1:768354/140‑1 (MQ=255)
                             gACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGa                                                                                                          >  1:407426/1‑140 (MQ=255)
                                accacTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATa                                                                                                       <  1:1227347/140‑1 (MQ=255)
                                  cacTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATaaa                                                                                                     >  2:1020414/1‑140 (MQ=255)
                                  cacTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATaaa                                                                                                     >  2:1154000/1‑140 (MQ=255)
                                    cTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACg                                                                                                   >  1:1025993/1‑140 (MQ=255)
                                    cTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACg                                                                                                   <  1:241275/140‑1 (MQ=255)
                                         aGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGt                                                                                              <  2:313965/140‑1 (MQ=255)
                                         aGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGt                                                                                              <  2:406786/140‑1 (MQ=255)
                                           cAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGttt                                                                                            >  1:730824/1‑140 (MQ=255)
                                            aaaGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGtttt                                                                                           >  1:323413/1‑140 (MQ=255)
                                              aGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTg                                                                                         >  2:603699/1‑140 (MQ=255)
                                                gCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCCGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCa                                                                                       <  2:1025993/140‑1 (MQ=255)
                                                   aTAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGGATTGGCTGAATAAACGAGAGTTTTTGCAGGc                                                                                    >  2:555401/1‑140 (MQ=255)
                                                      gACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCAt                                                                                 <  2:407426/140‑1 (MQ=255)
                                                          ccgcACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCa                                                                                       >  2:62623/1‑130 (MQ=255)
                                                          ccgcACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCa                                                                                       <  1:62623/130‑1 (MQ=255)
                                                          ccgcACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAgg                                                                                     >  1:1077312/1‑132 (MQ=255)
                                                          ccgcACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAgg                                                                                     <  2:1077312/132‑1 (MQ=255)
                                                          ccgcACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGa                                                                             >  2:251671/1‑140 (MQ=255)
                                                          ccgcACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGa                                                                             >  2:924583/1‑140 (MQ=255)
                                                          ccgcACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGa                                                                             >  1:259354/1‑140 (MQ=255)
                                                           cgcACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAg                                                                            >  2:816027/1‑140 (MQ=255)
                                                               caGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTa                                                                        <  1:1020414/140‑1 (MQ=255)
                                                                  ccGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTAccc                                                                     <  2:268364/140‑1 (MQ=255)
                                                                   cGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCg                                                                    <  1:694336/140‑1 (MQ=255)
                                                                          cAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATca                                                             <  1:885306/140‑1 (MQ=255)
                                                                            aGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATcaca                                                           >  1:366891/1‑140 (MQ=255)
                                                                                 tataAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGCCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCaa                                                      <  2:323413/140‑1 (MQ=255)
                                                                                  ataAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCaaa                                                     >  1:1263533/1‑140 (MQ=255)
                                                                                  ataAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCaaa                                                     >  1:170998/1‑140 (MQ=255)
                                                                                  ataAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCaaa                                                     >  1:838535/1‑140 (MQ=255)
                                                                                  ataAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCaaa                                                     >  2:1257181/1‑140 (MQ=255)
                                                                                  ataAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCaaa                                                     >  2:170140/1‑140 (MQ=255)
                                                                                  ataAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCaaa                                                     >  1:223388/1‑140 (MQ=255)
                                                                                       cTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGc                                                >  1:222844/1‑140 (MQ=255)
                                                                                         cACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCAc                                              >  2:1208590/1‑140 (MQ=255)
                                                                                         cACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCAc                                              >  2:754270/1‑140 (MQ=255)
                                                                                          aCCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACg                                             >  1:723766/1‑140 (MQ=255)
                                                                                             gATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAg                                          <  1:312509/140‑1 (MQ=255)
                                                                                               ttCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGgc                                        >  1:707073/1‑140 (MQ=255)
                                                                                                  aCTGACGCTTGGCCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGGATTGGCTGGATAAACCAAAGTTTTTACAGGCCATTGGTGGTTATCCGCTAATCACACTCAAAGAAGCACGGAGgcccg                                     >  2:180888/1‑140 (MQ=255)
                                                                                                  aCTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGgcgcg                                     <  2:373173/140‑1 (MQ=255)
                                                                                                  aCTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGgcgcg                                     <  1:251671/140‑1 (MQ=255)
                                                                                                    tGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGcc                                   <  1:603699/140‑1 (MQ=255)
                                                                                                     gACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCa                                  <  2:838535/140‑1 (MQ=255)
                                                                                                     gACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCa                                  <  2:1059146/140‑1 (MQ=255)
                                                                                                      aCGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCAc                                 >  2:1040481/1‑140 (MQ=255)
                                                                                                        gCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACgg                               >  2:939589/1‑140 (MQ=255)
                                                                                                        gCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACgg                               <  1:1154000/140‑1 (MQ=255)
                                                                                                        gCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACgg                               <  2:170998/140‑1 (MQ=255)
                                                                                                         ccGGGGCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGga                              <  1:1257181/140‑1 (MQ=255)
                                                                                                           ggggCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGgaga                            <  2:259354/140‑1 (MQ=255)
                                                                                                              gCTGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCa                         <  2:366891/140‑1 (MQ=255)
                                                                                                                tGTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGa                       <  2:1263533/140‑1 (MQ=255)
                                                                                                                 gTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGAt                      <  2:223388/140‑1 (MQ=255)
                                                                                                                 gTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGAt                      <  2:730824/140‑1 (MQ=255)
                                                                                                                 gTTTTTGCTGGTGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGAt                      <  1:1040481/140‑1 (MQ=255)
                                                                                                                            tGCATCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGcc           >  1:1105448/1‑140 (MQ=255)
                                                                                                                               aTCCCAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAAt        <  1:1208590/140‑1 (MQ=255)
                                                                                                                                 cccAACGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATgg      >  1:258088/1‑140 (MQ=255)
                                                                                                                                     aCGGCTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAAtt  >  1:880717/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GTTAAATCAAGGTATCCGGTTTTGAGCAAGACACCACTCACAGCAAAGGCCATAGACGCCGCACAGCCGCAGGACAAGCCCTATAAACTCACCGATTCACTGACGCCGGGGCTGTTTTTGCTGGTGCATCCCAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATT  >  NC_000913/2558837‑2559109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A