Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,287,806 T→C G127G (GGT→GGC)  yraH → putative fimbrial protein YraH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,287,8060TC100.0% 361.0 / NA 97G127G (GGT→GGC) yraHputative fimbrial protein YraH
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (45/52);  total (45/52)

GGGTGGGAGCACGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGTATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTTACTACGTATC  >  NC_000913/3287669‑3287937
                                                                                                                                         |                                                                                                                                   
gggtgggAGCACGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCAt                                                                                                                                   >  2:99937/1‑140 (MQ=255)
gggtgggAGCACGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCAt                                                                                                                                   >  2:434295/1‑140 (MQ=255)
gggtgggAGCACGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCAt                                                                                                                                   <  2:775221/140‑1 (MQ=255)
gggtgggAGCACGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCAt                                                                                                                                   >  2:796461/1‑140 (MQ=255)
gggtgggAGCACGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCAt                                                                                                                                   <  1:273300/140‑1 (MQ=255)
           cGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACg                                                                                                                        >  2:650570/1‑140 (MQ=255)
           cGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACg                                                                                                                        >  2:1044948/1‑140 (MQ=255)
           cGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACg                                                                                                                        >  2:937391/1‑140 (MQ=255)
           cGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACg                                                                                                                        >  1:664688/1‑140 (MQ=255)
                 cGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcgg                                                                                                                  >  2:461164/1‑140 (MQ=255)
                 cGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcgg                                                                                                                  >  2:934615/1‑140 (MQ=255)
                 cGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcgg                                                                                                                  >  1:726232/1‑140 (MQ=255)
                     aaCGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcggaaag                                                                                                              <  2:241508/140‑1 (MQ=255)
                      aCGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcggaaagc                                                                                                             >  1:734040/1‑140 (MQ=255)
                         ttGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcggaaagcgga                                                                                                          <  1:304274/140‑1 (MQ=255)
                         ttGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcggaaagcgga                                                                                                          <  2:986666/140‑1 (MQ=255)
                         ttGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcggaaagcgga                                                                                                          <  2:518855/140‑1 (MQ=255)
                                 tCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTAt                                                                                                  >  1:1152995/1‑140 (MQ=255)
                                 tCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTAt                                                                                                  >  2:469166/1‑140 (MQ=255)
                                  cTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATg                                                                                                 <  2:1094309/140‑1 (MQ=255)
                                   tttCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcgga                                                                                                                 >  1:556736/1‑123 (MQ=255)
                                   tttCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATgcgga                                                                                                                 <  2:556736/123‑1 (MQ=255)
                                    ttCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGcc                                                                                               <  1:1044948/140‑1 (MQ=255)
                                     tCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCa                                                                                              <  2:686327/140‑1 (MQ=255)
                                     tCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTCGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCa                                                                                              <  1:44521/140‑1 (MQ=255)
                                         tCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGa                                                                                          <  1:461164/140‑1 (MQ=255)
                                          cTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGaa                                                                                         <  1:335044/140‑1 (MQ=255)
                                              ggCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCt                                                                                     <  1:99937/140‑1 (MQ=255)
                                               gCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTa                                                                                    <  1:937391/140‑1 (MQ=255)
                                               gCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTa                                                                                    <  1:129684/140‑1 (MQ=255)
                                                   gAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGc                                                                                                >  2:653628/1‑124 (MQ=255)
                                                   gAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGc                                                                                                <  1:653628/124‑1 (MQ=255)
                                                   gAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGaa                                                                                         >  1:801563/1‑131 (MQ=255)
                                                   gAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGaa                                                                                         <  2:801563/131‑1 (MQ=255)
                                                   gAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTa                                                                                    <  2:1198352/136‑1 (MQ=255)
                                                   gAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTa                                                                                    >  1:1198352/1‑136 (MQ=255)
                                                   gAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATggg                                                                                >  1:664681/1‑140 (MQ=255)
                                                   gAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATggg                                                                                >  2:293903/1‑140 (MQ=255)
                                                    aaaCGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGc                                                                               >  1:696516/1‑140 (MQ=255)
                                                    aaaCGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGc                                                                               <  2:595732/140‑1 (MQ=255)
                                                    aaaCGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGc                                                                               <  1:469166/140‑1 (MQ=255)
                                                     aaCGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCa                                                                              >  2:89469/1‑140 (MQ=255)
                                                          gagaTAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGAt                                                                         >  2:515691/1‑140 (MQ=255)
                                                            gaTAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATaa                                                                       <  2:664688/140‑1 (MQ=255)
                                                              tAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAaca                                                                     <  1:244514/140‑1 (MQ=255)
                                                                  ggCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGt                                                                 >  1:1185667/1‑140 (MQ=255)
                                                                      ccGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAaca                                                                     >  2:394070/1‑132 (MQ=255)
                                                                      ccGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAaca                                                                     <  1:394070/132‑1 (MQ=255)
                                                                      ccGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTAt                                                             >  1:1252677/1‑140 (MQ=255)
                                                                        gTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCa                                                           >  2:551013/1‑140 (MQ=255)
                                                                        gTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCa                                                           >  2:1068881/1‑140 (MQ=255)
                                                                         tCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAg                                                          >  2:1049781/1‑140 (MQ=255)
                                                                         tCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAg                                                          >  1:819328/1‑140 (MQ=255)
                                                                             tAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATcc                                                      <  1:796461/140‑1 (MQ=255)
                                                                                cTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCcgg                                                   <  2:726232/140‑1 (MQ=255)
                                                                                 ttCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCcggc                                                  >  2:545107/1‑140 (MQ=255)
                                                                                  tCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCcggcg                                                 <  1:367979/140‑1 (MQ=255)
                                                                                  tCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCcggcg                                                 <  1:650570/140‑1 (MQ=255)
                                                                                  tCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCcggcg                                                 <  2:1274564/140‑1 (MQ=255)
                                                                                   cccTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCcggcgg                                                >  2:681449/1‑140 (MQ=255)
                                                                                   cccTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCcggcgg                                                >  2:569015/1‑140 (MQ=255)
                                                                                    ccTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGa                                               <  1:551013/140‑1 (MQ=255)
                                                                                    ccTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGa                                               >  1:30286/1‑140 (MQ=255)
                                                                                     cTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGaa                                              >  1:307802/1‑140 (MQ=255)
                                                                                         tCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATcc                                                      >  2:298532/1‑128 (MQ=255)
                                                                                         tCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATcc                                                      <  1:298532/128‑1 (MQ=255)
                                                                                             gCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATgg                                      >  1:330925/1‑140 (MQ=255)
                                                                                             gCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATgg                                      <  2:208398/140‑1 (MQ=255)
                                                                                              cAAACGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGt                                     <  2:1185667/140‑1 (MQ=255)
                                                                                              cAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGt                                     <  1:1049781/140‑1 (MQ=255)
                                                                                              cAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGt                                     <  1:545107/140‑1 (MQ=255)
                                                                                                   gTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGt                                <  1:621551/140‑1 (MQ=255)
                                                                                                   gTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGt                                <  2:734040/140‑1 (MQ=255)
                                                                                                            tttGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGa                       >  1:995894/1‑140 (MQ=255)
                                                                                                            tttGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGa                       >  1:487888/1‑140 (MQ=255)
                                                                                                             ttGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGt                                >  2:329777/1‑130 (MQ=255)
                                                                                                             ttGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGt                                <  1:329777/130‑1 (MQ=255)
                                                                                                             ttGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGAc                      >  1:290401/1‑140 (MQ=255)
                                                                                                             ttGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGAc                      >  1:530309/1‑140 (MQ=255)
                                                                                                              tGCTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGAcc                     <  2:995894/140‑1 (MQ=255)
                                                                                                                cTGGCATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCCGAAACATTAAGCCACTGAATGCTATGGTCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTc                   <  2:1152995/140‑1 (MQ=255)
                                                                                                                    cATAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCg               >  2:613765/1‑140 (MQ=255)
                                                                                                                     aTAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCa                  <  2:1153633/136‑1 (MQ=255)
                                                                                                                     aTAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCa                  >  1:1153633/1‑136 (MQ=255)
                                                                                                                      tAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCt             <  2:148391/140‑1 (MQ=255)
                                                                                                                      tAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCt             <  2:1252677/140‑1 (MQ=255)
                                                                                                                      tAGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGACAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCt             <  2:1171263/140‑1 (MQ=255)
                                                                                                                       aGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCtt            >  2:1218339/1‑140 (MQ=255)
                                                                                                                       aGCGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCtt            >  2:1144380/1‑140 (MQ=255)
                                                                                                                         cGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTtac          <  1:515691/140‑1 (MQ=255)
                                                                                                                         cGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTtac          <  2:842863/140‑1 (MQ=255)
                                                                                                                         cGGCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGAGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTtac          <  2:432316/140‑1 (MQ=255)
                                                                                                                          ggCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTtact         <  1:934615/140‑1 (MQ=255)
                                                                                                                           gCAACAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTtacta        <  1:1144380/140‑1 (MQ=255)
                                                                                                                               cAGGTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTTACTACGTa    <  1:613765/140‑1 (MQ=255)
                                                                                                                                 ggTGTGGGCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTTACTACGTATc  <  2:166314/140‑1 (MQ=255)
                                                                                                                                      gggCATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTTACTACGTAt   <  1:147112/134‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                   
GGGTGGGAGCACGATAACGGCAACGTTGAAGCGTCTTTCCGTCTATGGCTGGAAACGCGAGATAATGGCACCGTCCCTAACTTCCCTAATCTGGCAAAAGTAGGCTCTTTTGCTGGCATAGCGGCAACAGGTGTGGGTATCCGTATTGACGATGCGGAAAGCGGAAACATTATGCCACTGAATGCTATGGGCAATGATAACACGGTTTATCAGATCCCGGCGGAATCCAATGGTATTGTCAATGTTGACCTCATCGCTTACTACGTATC  >  NC_000913/3287669‑3287937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A