Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	161	75.5	2581324	99.3%	2563254	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,701,665	T→C	V368A (GTG→GCG)	yhjV →	putative transporter YhjV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,701,665	0	T	C	100.0%	348.4 / NA	94	V368A (GTG→GCG)	yhjV	putative transporter YhjV
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/57); total (37/57)

GCATTATTCTCAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGTGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTA  >  NC_000913/3701533‑3701801

gCATTATTCTCAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCttt                                                                                                                                   <  1:875163/140‑1 (MQ=255)

  attattCTCAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCa                                                                                                                                 >  1:678493/1‑140 (MQ=255)

  attattCTCAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCa                                                                                                                                 >  1:176435/1‑140 (MQ=255)

    tattCTCAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGt                                                                                                                               >  2:56488/1‑140 (MQ=255)

    tattCTCAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGt                                                                                                                               >  2:1212736/1‑140 (MQ=255)

     attCTCAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGtt                                                                                                                              >  2:1170558/1‑140 (MQ=255)

        ctcAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTggg                                                                                                                           >  2:254700/1‑140 (MQ=255)

        ctcAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTggg                                                                                                                           >  2:1282983/1‑140 (MQ=255)

          cAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGaa                                                                                                                         <  1:978962/140‑1 (MQ=255)

           aaTCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAg                                                                                                                        >  1:424453/1‑140 (MQ=255)

            aTCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGc                                                                                                                       <  2:118089/140‑1 (MQ=255)

            aTCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGc                                                                                                                       <  1:554168/140‑1 (MQ=255)

            aTCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGc                                                                                                                       >  2:990368/1‑140 (MQ=255)

             tCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGcc                                                                                                                      <  1:1206838/140‑1 (MQ=255)

              cTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGccc                                                                                                                     >  2:1130964/1‑140 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTTTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  1:307391/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  2:328349/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  1:107700/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  1:1130964/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  1:254700/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  2:26820/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  1:92299/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  1:1209888/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  1:1282983/140‑1 (MQ=255)

               tGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  2:300405/140‑1 (MQ=255)

                gTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGt                                                                                                                   >  1:201882/1‑140 (MQ=255)

                 ttAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    >  2:131288/1‑138 (MQ=255)

                 ttAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCg                                                                                                                    <  1:131288/138‑1 (MQ=255)

                 ttAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGtt                                                                                                                  <  2:1047942/140‑1 (MQ=255)

                 ttAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGtt                                                                                                                  <  1:102933/140‑1 (MQ=255)

                 ttAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGtt                                                                                                                  <  2:201882/140‑1 (MQ=255)

                    aGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTtata                                                                                                               <  2:830587/140‑1 (MQ=255)

                    aGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTtata                                                                                                               <  2:918346/140‑1 (MQ=255)

                    aGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTtata                                                                                                               <  2:144421/140‑1 (MQ=255)

                      ccGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATg                                                                                                             <  2:678493/140‑1 (MQ=255)

                         aaTTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGcc                                                                                                                      <  1:681220/128‑1 (MQ=255)

                         aaTTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGcc                                                                                                                      >  2:681220/1‑128 (MQ=255)

                         aaTTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGtt                                                                                                                  >  1:324687/1‑132 (MQ=255)

                         aaTTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGtt                                                                                                                  <  2:324687/132‑1 (MQ=255)

                         aaTTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTtata                                                                                                               >  2:618536/1‑135 (MQ=255)

                         aaTTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTtata                                                                                                               <  1:618536/135‑1 (MQ=255)

                         aaTTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTa                                                                                                          <  1:56488/140‑1 (MQ=255)

                           ttattGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTAtt                                                                                                        >  1:1185877/1‑140 (MQ=255)

                                gATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTc                                                                                                   <  1:732228/140‑1 (MQ=255)

                                gATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTc                                                                                                   <  2:424453/140‑1 (MQ=255)

                                gATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTc                                                                                                   <  2:38887/140‑1 (MQ=255)

                                   aCCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTg                                                                                                >  1:143062/1‑140 (MQ=255)

                                   aCCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTg                                                                                                >  1:44562/1‑140 (MQ=255)

                                     cAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGcc                                                                                              <  1:573469/140‑1 (MQ=255)

                                        gAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCa                                                                                           >  2:1069345/1‑140 (MQ=255)

                                        gAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCa                                                                                           >  1:140542/1‑140 (MQ=255)

                                              tAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGt                                                                                     <  2:140542/140‑1 (MQ=255)

                                                   cACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTc                                                                                <  1:1212736/140‑1 (MQ=255)

                                                   cACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTc                                                                                <  2:632346/140‑1 (MQ=255)

                                                   cACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTc                                                                                <  1:1288746/140‑1 (MQ=255)

                                                   cACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTc                                                                                <  1:218321/140‑1 (MQ=255)

                                                   cACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGACATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTc                                                                                >  1:1124930/1‑140 (MQ=255)

                                                      gcgTGCTGACTCTGGTGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTg                                                                             <  2:748872/140‑1 (MQ=255)

                                                      gcgTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTg                                                                             <  2:1011750/140‑1 (MQ=255)

                                                      gcgTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTg                                                                             <  1:751955/140‑1 (MQ=255)

                                                      gcgTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTg                                                                             <  1:751954/140‑1 (MQ=255)

                                                      gcgTGCTGACTCTGGCGATCTGCGCTTTTATCGACATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTg                                                                             <  2:1124930/140‑1 (MQ=255)

                                                       cgTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGa                                                                            >  1:1270270/1‑140 (MQ=255)

                                                        gTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGAt                                                                           >  2:535035/1‑140 (MQ=255)

                                                         tGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATc                                                                          >  1:1230501/1‑140 (MQ=255)

                                                                tctGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAg                                                                   >  1:215073/1‑140 (MQ=255)

                                                                tctGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAg                                                                   >  2:133757/1‑140 (MQ=255)

                                                                   ggCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCg                                                                <  1:1069345/140‑1 (MQ=255)

                                                                   ggCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCg                                                                >  2:15421/1‑140 (MQ=255)

                                                                    gCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGc                                                               >  1:331731/1‑140 (MQ=255)

                                                                     cGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGca                                                              <  2:44562/140‑1 (MQ=255)

                                                                     cGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGca                                                              <  1:990368/140‑1 (MQ=255)

                                                                        tCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGca                                                              >  1:1208281/1‑137 (MQ=255)

                                                                        tCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGca                                                              <  2:1208281/137‑1 (MQ=255)

                                                                                        cATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTcgcg                                           <  2:331731/140‑1 (MQ=255)

                                                                                         aTTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCgg                                          >  1:985363/1‑140 (MQ=255)

                                                                                           tACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGAt                                        >  2:645774/1‑140 (MQ=255)

                                                                                             cGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGAttt                                      <  1:567959/140‑1 (MQ=255)

                                                                                              gTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTa                                     <  1:15421/140‑1 (MQ=255)

                                                                                                  aCGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGc                                 <  2:176435/140‑1 (MQ=255)

                                                                                                  aCGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGc                                 >  1:126680/1‑140 (MQ=255)

                                                                                                      tttGGGTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTgg                             <  1:211505/140‑1 (MQ=255)

                                                                                                         gggTTTCGTTTCGTGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTg                          >  2:498804/1‑140 (MQ=255)

                                                                                                                    cgtGTATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTa               <  2:126680/140‑1 (MQ=255)

                                                                                                                     gtgtATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTAc              <  2:1185877/140‑1 (MQ=255)

                                                                                                                      tgtATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACg             <  2:143575/140‑1 (MQ=255)

                                                                                                                      tgtATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACg             <  1:1255030/140‑1 (MQ=255)

                                                                                                                      tgtATCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACg             >  2:965992/1‑140 (MQ=255)

                                                                                                                         aTCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCa          <  2:1270270/140‑1 (MQ=255)

                                                                                                                         aTCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCa          <  1:133757/140‑1 (MQ=255)

                                                                                                                          tCGGTGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCAt         >  2:657679/1‑140 (MQ=255)

                                                                                                                              tGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTg     >  1:887673/1‑140 (MQ=255)

                                                                                                                              tGCTGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTg     >  2:947591/1‑140 (MQ=255)

                                                                                                                                 tGGCGTTCTTTCAGTTGGGAAGCCCGTTATATGGTCTTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTa  <  2:887673/140‑1 (MQ=255)

GCATTATTCTCAATCTGTTAAGCCGAATTATTGATACCAAGAAAATTAACTCACGCGTGCTGACTCTGGCGATCTGCGCTTTTATCGTCATTACGTTGACGATTTGGGTTTCGTTTCGTGTATCGGTGCTGGTGTTCTTTCAGTTGGGAAGCCCGTTATATGGTATTGTGTCGTGCCTCATTCCGTTTTTCCTGATCTATAAAGTCGCACAACTGGAAAAACTTCGCGGATTTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTA  >  NC_000913/3701533‑3701801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A