Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 161 75.5 2581324 99.3% 2563254 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,765,703 G→A G1174D (GGC→GAC)  rhsA → rhs element protein RhsA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,765,7030GA97.5% 234.2 / ‑2.0 79G1174D (GGC→GAC) rhsArhs element protein RhsA
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base A (42/35);  total (43/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01

AAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACT  >  NC_000913/3765571‑3765839
                                                                                                                                    |                                                                                                                                        
aaaaCCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACctg                                                                                                                                   <  1:884464/140‑1 (MQ=255)
  aaCCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACctgct                                                                                                                                 <  1:751239/140‑1 (MQ=255)
       gATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGTCGCTGGCCCTTATCAGCAAGAAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCtgaatg                                                                                                                            >  1:729872/1‑140 (MQ=255)
       gATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCtgaatg                                                                                                                            >  2:666135/1‑140 (MQ=255)
            aCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACa                                                                                                                                        >  2:536256/1‑123 (MQ=255)
            aCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAagag                                                                                                                       >  1:166021/1‑140 (MQ=255)
              ccGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGaa                                                                                                                     <  1:787912/140‑1 (MQ=255)
              ccGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGaa                                                                                                                     >  2:768057/1‑140 (MQ=255)
                  tgtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAAccc                                                                                                                  <  1:708844/139‑1 (MQ=255)
                  tgtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAAccc                                                                                                                  >  2:708844/1‑139 (MQ=255)
                    tACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCa                                                                                                               >  2:184760/1‑140 (MQ=255)
                    tACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCa                                                                                                               <  2:250929/140‑1 (MQ=255)
                      cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATc                                                                                                             >  2:610884/1‑140 (MQ=255)
                        cGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAg                                                                                                           >  2:1151308/1‑140 (MQ=255)
                           cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTg                                                                                                        >  1:1041172/1‑140 (MQ=255)
                            ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAg                                                                                                           <  2:627476/136‑1 (MQ=255)
                            ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAg                                                                                                           >  1:627476/1‑136 (MQ=255)
                            ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                                                                       >  2:157120/1‑140 (MQ=255)
                            ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                                                                       >  2:580498/1‑140 (MQ=255)
                              cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                                                                     >  1:170848/1‑140 (MQ=255)
                              cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                                                                     >  1:749559/1‑140 (MQ=255)
                               gcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcagc                                                                                                    <  1:270829/140‑1 (MQ=255)
                                              gTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGc                                                                                     <  1:666135/140‑1 (MQ=255)
                                                aCCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCg                                                                                   <  1:157120/140‑1 (MQ=255)
                                                   ccTGCGGCCATCCGGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGAAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                                                                <  2:729872/139‑1 (MQ=14)
                                                      gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcag                                                                             <  2:1041172/140‑1 (MQ=255)
                                                      gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcag                                                                             >  2:159051/1‑140 (MQ=255)
                                                      gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcag                                                                             >  1:658192/1‑140 (MQ=255)
                                                       cGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagc                                                                            >  2:16793/1‑140 (MQ=255)
                                                       cGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagc                                                                            >  2:924215/1‑140 (MQ=255)
                                                       cGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagc                                                                            >  1:1166615/1‑140 (MQ=255)
                                                        gACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagca                                                                           <  2:518996/140‑1 (MQ=255)
                                                         aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                                                                <  2:570191/134‑1 (MQ=40)
                                                         aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                                                                >  1:570191/1‑134 (MQ=255)
                                                         aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                                                                >  2:92509/1‑134 (MQ=255)
                                                         aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                                                                <  1:92509/134‑1 (MQ=255)
                                                         aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGcagcag                                                                          >  2:3828/1‑140 (MQ=255)
                                                         aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGcagcag                                                                          >  2:158816/1‑140 (MQ=255)
                                                             tCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTatg                                                                      <  2:237777/140‑1 (MQ=255)
                                                                 ggCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTAtgatga                                                                  <  2:658192/140‑1 (MQ=255)
                                                                 ggCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTAtgatga                                                                  <  1:159051/140‑1 (MQ=255)
                                                                      gCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTGTCCGCCTGCCGGGGCAGCAGTATGATGAGGAGt                                                             <  1:1219807/140‑1 (MQ=255)
                                                                      gCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGt                                                             <  2:68300/140‑1 (MQ=255)
                                                                      gCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGt                                                             <  2:166021/140‑1 (MQ=255)
                                                                        cGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTcc                                                           <  2:601130/140‑1 (MQ=255)
                                                                         gCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCg                                                          <  2:1166615/140‑1 (MQ=255)
                                                                         gCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCg                                                          <  1:610884/140‑1 (MQ=255)
                                                                          cTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCgg                                                         >  1:481082/1‑140 (MQ=255)
                                                                           tGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc                                                        <  1:204867/140‑1 (MQ=255)
                                                                           tGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc                                                        <  1:1151308/140‑1 (MQ=255)
                                                                            ggCCCTTATCAGCAAGGAAGGGATAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc                                                       <  2:738253/140‑1 (MQ=255)
                                                                            ggCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc                                                       <  1:16793/140‑1 (MQ=255)
                                                                            ggCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc                                                       <  1:924215/140‑1 (MQ=255)
                                                                                 ttATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGt                                                             >  2:1110950/1‑129 (MQ=255)
                                                                                 ttATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGt                                                             <  1:1110950/129‑1 (MQ=38)
                                                                                    tCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTAc                                               >  2:1017097/1‑140 (MQ=37)
                                                                                       gCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAc                                            >  1:322754/1‑140 (MQ=37)
                                                                                       gCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAc                                            >  2:683876/1‑140 (MQ=21)
                                                                                       gCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAc                                            >  2:526921/1‑140 (MQ=21)
                                                                                        cAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAcc                                           >  1:989014/1‑140 (MQ=21)
                                                                                          aggaaggGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGc                                         <  1:768057/140‑1 (MQ=18)
                                                                                           ggaaggGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGcc                                        >  1:875149/1‑140 (MQ=17)
                                                                                           ggaaggGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGcc                                        >  2:1202149/1‑140 (MQ=18)
                                                                                             aaggGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAc                                      >  2:806370/1‑140 (MQ=17)
                                                                                             aaggGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAc                                      <  1:580498/140‑1 (MQ=17)
                                                                                              aggGACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAcc                                     >  1:403298/1‑140 (MQ=17)
                                                                                               gggACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCg                                    <  2:491910/140‑1 (MQ=17)
                                                                                               gggACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCg                                    <  2:170848/140‑1 (MQ=17)
                                                                                               gggACAACAGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCg                                    <  1:683876/140‑1 (MQ=17)
                                                                                                  acaacaGAATGGTGCGCAGAATACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCta                                 >  2:120560/1‑140 (MQ=11)
                                                                                                                       tACGATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTACAGGGGCg            <  1:407123/140‑1 (MQ=14)
                                                                                                                          gATGAATGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGta         <  1:1178252/140‑1 (MQ=18)
                                                                                                                               aTGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCa    >  2:176588/1‑140 (MQ=17)
                                                                                                                               aTGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCa    >  2:598044/1‑140 (MQ=17)
                                                                                                                               aTGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCa    >  2:481885/1‑140 (MQ=17)
                                                                                                                               aTGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCa    >  1:384109/1‑140 (MQ=17)
                                                                                                                               aTGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCa    >  1:150012/1‑140 (MQ=17)
                                                                                                                               aTGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCa    >  2:336066/1‑140 (MQ=17)
                                                                                                                               aTGGGACAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGCATATCa    >  2:356864/1‑140 (MQ=12)
                                                                                                                                 gggaCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACt  <  2:403298/140‑1 (MQ=18)
                                                                                                                                 gggaCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACt  <  1:356864/140‑1 (MQ=18)
                                                                                                                                    |                                                                                                                                        
AAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCAAGGAAGGGACAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCAGGGGCGGTATATCACT  >  NC_000913/3765571‑3765839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A