Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 155 60.3 2039550 99.3% 2025273 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,293,106 (G)7→8 coding (1595/1659 nt) nrfE → putative cytochrome c‑type biogenesis protein NrfE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,293,0991.G96.8% 212.4 / ‑0.1 63coding (1588/1659 nt)nrfEputative cytochrome c‑type biogenesis protein NrfE
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base G (35/26);  total (36/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.15e-01

CGCCGTCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑GGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCGTAGACACCTG  >  NC_000913/4292967‑4293233
                                                                                                                                     |                                                                                                                                      
cGCCGTCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑ggggggg                                                                                                                                 <  1:776345/140‑1 (MQ=255)
cGCCGTCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑ggggggg                                                                                                                                 >  1:485928/1‑140 (MQ=255)
     tCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑ggggggggagga                                                                                                                            <  1:717199/140‑6 (MQ=255)
      caacaaATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGCCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGAt                                                                                                                            >  1:693916/1‑140 (MQ=255)
               atgGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTtgatga                                                                                                                   >  1:887888/1‑140 (MQ=255)
               atgGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTtgatga                                                                                                                   >  1:218914/1‑140 (MQ=255)
                  gAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTg                                                                                                                >  1:626345/1‑140 (MQ=255)
                       gTCAATTCGCTGGAACGGCATCCACGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGgc                                                                                                           <  2:843264/140‑1 (MQ=255)
                          aaTTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCa                                                                                                        <  1:404648/140‑1 (MQ=255)
                          aaTTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCa                                                                                                        <  2:975775/140‑1 (MQ=255)
                                      cGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGa                                                                                            >  1:762101/1‑140 (MQ=255)
                                              aTGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCgggg                                                                                    >  1:967588/1‑140 (MQ=255)
                                                  cTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGgaag                                                                                >  1:56496/1‑140 (MQ=255)
                                                   tGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGgaaga                                                                               >  2:372612/1‑140 (MQ=255)
                                                     gTATGGGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGaagaag                                                                             >  2:1017832/1‑140 (MQ=255)
                                                      tATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGa                                                                                            >  2:506502/1‑124 (MQ=255)
                                                      tATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGa                                                                                            <  1:506502/124‑1 (MQ=255)
                                                          cGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAgc                                                                            >  1:838497/1‑136 (MQ=255)
                                                          cGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAgc                                                                            <  2:838497/136‑1 (MQ=255)
                                                           ggccATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGAt                                                                       <  2:693916/137‑1 (MQ=255)
                                                             tCATGGGGGAGAAAAGTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGa                                                                     >  2:234050/1‑140 (MQ=255)
                                                                tGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGGGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATa                                                                  <  2:949687/140‑1 (MQ=255)
                                                                tGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGGGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATa                                                                  >  1:694888/1‑140 (MQ=255)
                                                                 gggggAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATaa                                                                 <  1:372612/140‑1 (MQ=255)
                                                                       gaAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATaaa                                                                >  1:1017414/1‑135 (MQ=255)
                                                                       gaAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATaaa                                                                <  2:1017414/135‑1 (MQ=255)
                                                                       gaAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCt                                                           >  2:383766/1‑140 (MQ=255)
                                                                       gaAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCt                                                           >  2:341124/1‑140 (MQ=255)
                                                                       gaAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑GGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCtt                                                          >  2:197406/1‑140 (MQ=255)
                                                                            cTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCa                                                      <  1:1017832/140‑1 (MQ=255)
                                                                               ggCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGc                                                   >  2:854221/1‑140 (MQ=255)
                                                                               ggCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGc                                                   >  1:460689/1‑140 (MQ=255)
                                                                                 ccGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTa                                                 <  1:854221/140‑1 (MQ=255)
                                                                                 ccGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTa                                                 <  1:383766/140‑1 (MQ=255)
                                                                                    gATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGc                                                   >  1:89093/1‑135 (MQ=255)
                                                                                    gATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGc                                                   <  2:89093/135‑1 (MQ=255)
                                                                                                 ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTAc                                   >  2:452419/1‑138 (MQ=255)
                                                                                                 ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTAc                                   <  1:452419/138‑1 (MQ=255)
                                                                                                 ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCt                                 >  2:835487/1‑140 (MQ=255)
                                                                                                 ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCt                                 >  2:1013586/1‑140 (MQ=255)
                                                                                                 ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCt                                 >  2:636500/1‑140 (MQ=255)
                                                                                                 ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCt                                 >  1:581829/1‑140 (MQ=255)
                                                                                                 ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCt                                 >  2:37876/1‑140 (MQ=255)
                                                                                                     tttGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGttt                             <  1:87300/140‑1 (MQ=255)
                                                                                                         tatgtaCAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTgcg                         >  2:85533/1‑140 (MQ=255)
                                                                                                            gtaCAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCAc                      <  1:85533/140‑1 (MQ=255)
                                                                                                              aCAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGc                    <  1:341124/140‑1 (MQ=255)
                                                                                                               cacaGCGGTGTGCGTTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCt                   <  2:626345/137‑1 (MQ=255)
                                                                                                               cAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCt                   <  1:154620/140‑1 (MQ=255)
                                                                                                                aaaGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCCTTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTc                  <  2:887888/140‑1 (MQ=255)
                                                                                                                aaaGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCa                       >  2:853978/1‑135 (MQ=255)
                                                                                                                aaaGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCa                       <  1:853978/135‑1 (MQ=255)
                                                                                                                aaaGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTc                  <  2:218914/140‑1 (MQ=255)
                                                                                                                aaaGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTc                  <  1:636500/140‑1 (MQ=255)
                                                                                                                aaaGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTc                  <  2:486879/140‑1 (MQ=255)
                                                                                                                  aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTc                  <  1:846947/138‑1 (MQ=255)
                                                                                                                  aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTc                  >  2:846947/1‑138 (MQ=255)
                                                                                                                  aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAg                >  1:964940/1‑140 (MQ=255)
                                                                                                                  aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAg                >  2:23155/1‑140 (MQ=255)
                                                                                                                  aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAg                >  1:670862/1‑140 (MQ=255)
                                                                                                                  aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAg                >  1:572358/1‑140 (MQ=255)
                                                                                                                      gtgtGCGCTGGATCT‑GGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCGt           <  1:197406/140‑1 (MQ=255)
                                                                                                                       tgtgCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTTAGGTCGt           >  1:972595/1‑140 (MQ=255)
                                                                                                                       tgtgCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCGt           >  2:797809/1‑140 (MQ=255)
                                                                                                                       tgtgCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCGt           >  1:454755/1‑140 (MQ=255)
                                                                                                                         tgCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCGTAg         <  2:670862/140‑1 (MQ=255)
                                                                                                                                gATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCGTAGACACCTg  >  2:981709/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                      
CGCCGTCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑GGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCGTAGACACCTG  >  NC_000913/4292967‑4293233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A