Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 155 60.3 2039550 99.3% 2025273 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,633,830 A→G T12A (ACG→GCG)  ytjC → putative phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,633,8300AG97.0% 222.3 / ‑2.1 66T12A (ACG→GCG) ytjCputative phosphatase
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base G (38/26);  total (39/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01

AGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATATCATCAGTAG  >  NC_000913/4633693‑4633957
                                                                                                                                         |                                                                                                                               
aGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCg                                                                                                                               <  1:738480/140‑1 (MQ=255)
    tGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGt                                                                                                                           >  2:241948/1‑140 (MQ=255)
    tGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGt                                                                                                                           >  1:414755/1‑140 (MQ=255)
     ggCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTg                                                                                                                          >  2:368893/1‑140 (MQ=255)
     ggCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTg                                                                                                                          >  1:481072/1‑140 (MQ=255)
       ccTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGa                                                                                                                        >  2:159934/1‑140 (MQ=255)
              tttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGa                                                                                                                 <  2:219831/140‑1 (MQ=255)
               ttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAg                                                                                                                <  1:184827/140‑1 (MQ=255)
                   cGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGAc                                                                                                            <  1:460165/140‑1 (MQ=255)
                   cGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGAc                                                                                                            <  1:983443/140‑1 (MQ=255)
                                           cTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGcc                                                                                    >  1:737946/1‑140 (MQ=255)
                                           cTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGcc                                                                                    <  2:481072/140‑1 (MQ=255)
                                                   aTAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGAcc                                                                            >  1:612329/1‑140 (MQ=255)
                                                   aTAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGAcc                                                                            >  1:890293/1‑140 (MQ=255)
                                                   aTAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGAcc                                                                            >  1:853583/1‑140 (MQ=255)
                                                        cAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCaa                                                                       <  2:853583/140‑1 (MQ=255)
                                                        cAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCaa                                                                       <  2:612329/140‑1 (MQ=255)
                                                          gCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAg                                                                     >  1:768737/1‑140 (MQ=255)
                                                           cATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAgg                                                                    >  1:238523/1‑140 (MQ=255)
                                                            aTTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGt                                                                   >  1:965751/1‑140 (MQ=255)
                                                                cTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCt                                                                                <  2:53267/123‑1 (MQ=255)
                                                                cTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCt                                                                                >  1:53267/1‑123 (MQ=255)
                                                                cTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGc                                                               >  1:564360/1‑140 (MQ=255)
                                                                 tCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCa                                                              <  2:890293/140‑1 (MQ=255)
                                                                 tCAGAAAATTAACGTTACAGCAGTATACGG‑AAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCaa                                                             <  2:325299/140‑1 (MQ=255)
                                                                   aGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAAc                                                            >  1:627129/1‑140 (MQ=255)
                                                                          tAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGAt                                                     >  2:245487/1‑140 (MQ=255)
                                                                            aCGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGc                                                   <  2:627129/140‑1 (MQ=255)
                                                                             cGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCa                                                  <  1:245487/140‑1 (MQ=255)
                                                                                  cagcagTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTgg                                             <  2:414755/140‑1 (MQ=255)
                                                                                        tataCGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAAccc                                       >  2:356521/1‑140 (MQ=255)
                                                                                          taCGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGt                                     >  1:892149/1‑140 (MQ=255)
                                                                                          taCGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGt                                     >  2:495042/1‑140 (MQ=255)
                                                                                          taCGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGt                                     >  1:870220/1‑140 (MQ=255)
                                                                                              gAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCa                                 <  2:892149/140‑1 (MQ=255)
                                                                                              gAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCa                                 <  2:560164/140‑1 (MQ=255)
                                                                                               aaaaaaaGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCaa                                >  2:4047/1‑140 (MQ=255)
                                                                                                  aaaaGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGGCGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCaaa                               <  1:460664/138‑1 (MQ=255)
                                                                                                  aaaaGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCaaa                               >  2:460664/1‑138 (MQ=255)
                                                                                                  aaaaGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAaga                             >  1:825115/1‑140 (MQ=255)
                                                                                                    aaGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCaaa                               >  2:68596/1‑136 (MQ=255)
                                                                                                    aaGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCaaa                               <  1:68596/136‑1 (MQ=255)
                                                                                                      gCATGTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACGGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCtt                         >  1:845809/1‑140 (MQ=255)
                                                                                                         tGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGc                      >  1:637998/1‑140 (MQ=255)
                                                                                                          gTTACAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCa                     <  1:657224/140‑1 (MQ=255)
                                                                                                          gTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCa                     <  2:637998/140‑1 (MQ=255)
                                                                                                             aCAGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTa                  <  2:768737/140‑1 (MQ=255)
                                                                                                               aGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACg                <  1:368893/140‑1 (MQ=255)
                                                                                                               aGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACg                <  1:241948/140‑1 (MQ=255)
                                                                                                               aGGTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACg                <  1:695464/140‑1 (MQ=255)
                                                                                                                ggTATACCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGc               <  2:238523/140‑1 (MQ=255)
                                                                                                                    taCCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCatat           >  2:631777/1‑140 (MQ=255)
                                                                                                                    taCCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCatat           >  2:839335/1‑140 (MQ=255)
                                                                                                                    taCCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCatat           >  2:967440/1‑140 (MQ=255)
                                                                                                                     aCCTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATatc          >  2:111246/1‑140 (MQ=255)
                                                                                                                      ccTAGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATatca         >  2:202357/1‑140 (MQ=255)
                                                                                                                         aGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATAtcatca      >  2:755055/1‑140 (MQ=255)
                                                                                                                         aGTCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATAtcatca      >  2:867238/1‑140 (MQ=255)
                                                                                                                           tCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATATCATCAGt    >  1:934764/1‑140 (MQ=255)
                                                                                                                           tCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATATCATCAGt    >  1:837211/1‑140 (MQ=255)
                                                                                                                           tCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATATCATCAGt    >  1:729487/1‑140 (MQ=255)
                                                                                                                           tCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATATCATCAGt    >  1:612338/1‑140 (MQ=255)
                                                                                                                           tCCGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATATCATCAGt    >  1:321988/1‑140 (MQ=255)
                                                                                                                             cGCCACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATATCATCAGTAg  <  1:967440/140‑1 (MQ=255)
                                                                                                                               ccACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATatcat        >  2:629423/1‑132 (MQ=255)
                                                                                                                               ccACGGTGAAGCGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATatcat        <  1:629423/132‑1 (MQ=255)
                                                                                                                                         |                                                                                                                               
AGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCGTGCCAAAGAGCTTGGCATTACGCATATCATCAGTAG  >  NC_000913/4633693‑4633957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A