Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,420,378 A→G N5S (AAC→AGC)  ydaS → Rac prophage; toxin YdaS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,420,3780AG100.0% 390.6 / NA 108N5S (AAC→AGC) ydaSRac prophage; toxin YdaS
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (57/51);  total (57/51)

Only 100 of 109 total aligned reads displayed.

TGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATTGCCTGCCGAGAGATGTC  >  NC_000913/1420242‑1420506
                                                                                                                                         |                                                                                                                                
tGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTa                                                                                                                               <  2:203001/140‑1 (MQ=255)
     aaTATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTattcat                                                                                                                          <  1:109496/140‑1 (MQ=255)
       tatTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTattcattc                                                                                                                        <  1:618343/140‑1 (MQ=255)
       tatTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATG‑AAAAAGAGAGCTAttcattca                                                                                                                       >  2:1144770/1‑140 (MQ=255)
            tcCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTcaagca                                                                                                                   >  1:452645/1‑140 (MQ=255)
            tcCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTcaagca                                                                                                                   <  2:929530/140‑1 (MQ=255)
            tcCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTcaagca                                                                                                                   >  1:684569/1‑140 (MQ=255)
            tcCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTcaagca                                                                                                                   >  2:656799/1‑140 (MQ=255)
            tcCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTcaagca                                                                                                                   >  1:694321/1‑140 (MQ=255)
            tcCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTcaagca                                                                                                                   >  1:929530/1‑140 (MQ=255)
              cTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATG‑AAAAAGAGAGCTATTCATTCaagcaagc                                                                                                                <  1:1144770/140‑1 (MQ=255)
                aTGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCt                                                                                                               <  1:1050052/140‑1 (MQ=255)
                   cgcATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTtgt                                                                                                            <  2:680014/140‑1 (MQ=255)
                      attacattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCt                                                                                                         <  2:1244962/140‑1 (MQ=255)
                        tacattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCtgt                                                                                                       >  2:660889/1‑140 (MQ=255)
                        tacattaGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCtgt                                                                                                       >  1:497468/1‑140 (MQ=255)
                                  aaTCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTggg                                                                                             <  1:1316516/140‑1 (MQ=255)
                                    tCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCa                                                                                           >  1:985241/1‑140 (MQ=255)
                                    tCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCa                                                                                           >  2:992176/1‑140 (MQ=255)
                                    tCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCa                                                                                           >  2:69691/1‑140 (MQ=255)
                                    tCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCa                                                                                           >  1:615159/1‑140 (MQ=255)
                                    tCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCa                                                                                           >  2:935744/1‑140 (MQ=255)
                                    tCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCa                                                                                           >  1:301446/1‑140 (MQ=255)
                                      ccTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAAt                                                                                         <  2:615159/140‑1 (MQ=255)
                                      ccTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAAt                                                                                         <  2:301446/140‑1 (MQ=255)
                                         aCCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATA‑TTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGc                                                                                     <  1:808619/140‑1 (MQ=255)
                                           ccTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCa                                                                                    <  1:994282/140‑1 (MQ=255)
                                           ccTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCa                                                                                    <  2:62291/140‑1 (MQ=255)
                                               tcTGCATTAGGCACAGCCTATTGACAATTGCGGTAGGCGTCGCCTAATATTTTTTTGTGGTTTTTGGGGTT‑ATTTTATGAAAAAAAAGAGCTATTTATTTAAGCAAGCTTTTGCTGTTGTCGGTGGGCAATCAGCaaaag                                                                                >  2:182562/2‑137 (MQ=255)
                                               aCTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAAt                                                                                         <  2:88656/131‑1 (MQ=255)
                                               aCTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATgg                                                                                >  1:1245235/1‑140 (MQ=255)
                                               aCTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATgg                                                                                >  2:1293454/1‑140 (MQ=255)
                                                cTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGc                                                                               >  1:620265/1‑140 (MQ=255)
                                                  gCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTa                                                                             >  1:200412/1‑140 (MQ=255)
                                                    aTTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAgg                                                                           >  1:1044583/1‑140 (MQ=255)
                                                     ttAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGc                                                                          >  2:70054/1‑140 (MQ=255)
                                                     ttAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGc                                                                          >  2:619326/1‑140 (MQ=255)
                                                       aGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCtt                                                                        <  1:69691/140‑1 (MQ=255)
                                                        ggCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCttt                                                                       <  2:724223/140‑1 (MQ=255)
                                                        ggCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCttt                                                                       >  2:213969/1‑140 (MQ=255)
                                                        ggCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCttt                                                                       >  1:1265240/1‑140 (MQ=255)
                                                         gCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCtttt                                                                      <  2:1245235/140‑1 (MQ=255)
                                                         gCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCtttt                                                                      <  1:935744/140‑1 (MQ=255)
                                                          cacaGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTa                                                                     <  1:182562/140‑1 (MQ=255)
                                                          cacaGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTa                                                                     >  2:876078/1‑140 (MQ=255)
                                                             aGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgt                                                                  >  1:124847/1‑140 (MQ=255)
                                                             aGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgt                                                                  >  1:793519/1‑140 (MQ=255)
                                                             aGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgt                                                                  >  1:696576/1‑140 (MQ=255)
                                                               ccTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgtgt                                                                >  1:1183251/1‑140 (MQ=255)
                                                               ccTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgtgt                                                                <  2:985241/140‑1 (MQ=255)
                                                                  aTTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATc                                                             <  2:616350/140‑1 (MQ=255)
                                                                  aTTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATc                                                             <  2:226921/140‑1 (MQ=255)
                                                                  aTTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATc                                                             >  1:226921/1‑140 (MQ=255)
                                                                  aTTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATc                                                             <  2:1265240/140‑1 (MQ=255)
                                                                   ttGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCa                                                            <  2:620265/140‑1 (MQ=255)
                                                                        aaTTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTcc                                                       <  2:497468/140‑1 (MQ=255)
                                                                        aaTTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTcc                                                       <  1:821958/140‑1 (MQ=255)
                                                                        aaTTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTcc                                                       <  1:1228658/140‑1 (MQ=255)
                                                                         aTTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTTAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgtg                                                                 >  2:1338597/1‑129 (MQ=255)
                                                                         aTTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTTAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGgtg                                                                 <  1:1338597/129‑1 (MQ=255)
                                                                         aTTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCa                                                      >  1:697988/1‑140 (MQ=255)
                                                                         aTTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCa                                                      >  2:136033/1‑140 (MQ=255)
                                                                           tGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAg                                                    >  2:1153520/1‑140 (MQ=255)
                                                                             cGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTcc                                                       >  1:1089007/1‑135 (MQ=255)
                                                                             cGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTcc                                                       <  2:1089007/135‑1 (MQ=255)
                                                                             cGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCg                                                  >  2:1382133/1‑140 (MQ=255)
                                                                             cGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCg                                                  <  1:876078/140‑1 (MQ=255)
                                                                             cGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCg                                                  >  1:329706/1‑140 (MQ=255)
                                                                              gTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGt                                                 <  2:255815/140‑1 (MQ=255)
                                                                               ttAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTa                                                <  2:1044583/140‑1 (MQ=255)
                                                                                tAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTaa                                               <  2:200412/140‑1 (MQ=255)
                                                                                  ggCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAAt                                             >  1:347213/1‑140 (MQ=255)
                                                                                  ggCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAAt                                             <  1:992176/140‑1 (MQ=255)
                                                                                  ggCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAAt                                             >  1:594765/1‑140 (MQ=255)
                                                                                    cGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCa                                           >  1:470979/1‑140 (MQ=255)
                                                                                     gTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCaa                                          >  1:1471955/1‑140 (MQ=255)
                                                                                       cGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATg                                        <  1:1153520/140‑1 (MQ=255)
                                                                                       cGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATg                                        <  1:1382133/140‑1 (MQ=255)
                                                                                       cGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATg                                        <  2:1403910/140‑1 (MQ=255)
                                                                                          cTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGAt                                     <  1:619326/140‑1 (MQ=255)
                                                                                             atatTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCaa                                  <  2:281461/140‑1 (MQ=255)
                                                                                             atatTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCaa                                  <  2:696576/140‑1 (MQ=255)
                                                                                             atatTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCaa                                  <  2:124847/140‑1 (MQ=255)
                                                                                                   cTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCaa                                  >  1:662496/1‑134 (MQ=255)
                                                                                                   cTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCaa                                  <  2:662496/134‑1 (MQ=255)
                                                                                                      tgt‑gtTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACg                         >  2:1165759/1‑140 (MQ=255)
                                                                                                       gt‑gtTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGt                        >  1:185254/1‑140 (MQ=255)
                                                                                                       gt‑gtTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGGAAATCAATGGATCAAAGGGGTACGt                        >  2:1460225/1‑140 (MQ=255)
                                                                                                       gt‑gtTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTCAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGCGGTACGt                        >  1:239459/1‑140 (MQ=255)
                                                                                                        t‑gtTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTc                       >  2:1462060/1‑140 (MQ=255)
                                                                                                          gtTTTTGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCa                      <  2:1019968/140‑1 (MQ=255)
                                                                                                               tGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATtgc                 <  1:1463696/140‑1 (MQ=255)
                                                                                                               tGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATtgc                 <  1:136033/140‑1 (MQ=255)
                                                                                                               tGGAGTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATtgc                 <  2:185254/140‑1 (MQ=255)
                                                                                                                   gTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATtgcctgc             >  1:1078536/1‑140 (MQ=255)
                                                                                                                   gTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATtgc                 >  1:699033/1‑136 (MQ=255)
                                                                                                                   gTTCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATtgc                 <  2:699033/136‑1 (MQ=255)
                                                                                                                    ttCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATtgcctgcc            <  2:594765/140‑1 (MQ=255)
                                                                                                                     tCATTCGATGAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATTGCCTGCCg           >  2:6725/1‑140 (MQ=255)
                                                                                                                              gAAAAAAGAGAGCTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATTGCCTGCCGAGAGATGTc  >  2:524407/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                
TGCTTAATATTCTCCTATGCGCATTACATTAGGCAATCCCTACCCTTACTGCATTAGGCACAGCCTATTGACAATTGCGTTAGGCGTCGCCTAATATTTCTGTGT‑GTTTTTGGAGTTCATTCGATGAAAAAAGAGAACTATTCATTCAAGCAAGCTTGTGCTGTTGTCGGTGGGCAATCAGCAATGGCTAGGCTTTTAGGTGTATCACCTCCAAGCGTAAATCAATGGATCAAAGGGGTACGTCAATTGCCTGCCGAGAGATGTC  >  NC_000913/1420242‑1420506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A