Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,645,811 (T)6→5 coding (62/240 nt) relB ← Qin prophage; antitoxin/DNA‑binding transcriptional repressor RelB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,645,8060T.100.0% 417.6 / NA 99coding (67/240 nt)relBQin prophage; antitoxin/DNA‑binding transcriptional repressor RelB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (46/53);  total (46/53)

Only 100 of 106 total aligned reads displayed.

TACGAAGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCATTTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACTACAACATGCTTAGGGCA  >  NC_000913/1645671‑1645935
                                                                                                                                       |                                                                                                                                 
tACGAAGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCAttttt                                                                                                                               <  1:805016/140‑1 (MQ=255)
 aCGAAGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCAtttttc                                                                                                                              >  2:197109/1‑139 (MQ=255)
 aCGAAGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCAtttttc                                                                                                                              >  1:879673/1‑139 (MQ=255)
 aCGAAGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCAtttttc                                                                                                                              >  1:186812/1‑139 (MQ=255)
 aCGAAGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCAtttttc                                                                                                                              >  2:1384861/1‑139 (MQ=255)
 aCGAAGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCAtttttc                                                                                                                              >  2:948350/1‑139 (MQ=255)
    aaGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCAtttttcaag                                                                                                                           <  1:815671/140‑5 (MQ=255)
      gCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  1:1207946/140‑1 (MQ=255)
      gCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  1:648333/140‑1 (MQ=255)
      gCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  2:879673/140‑1 (MQ=255)
      gCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  1:197109/140‑1 (MQ=255)
      gCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  1:696995/140‑1 (MQ=255)
       ccGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcgc                                                                                                                       >  2:1080072/1‑140 (MQ=255)
       ccGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcgc                                                                                                                       >  2:1470947/1‑140 (MQ=255)
       ccGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  2:933344/139‑1 (MQ=255)
       ccGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        >  2:1213970/1‑139 (MQ=255)
       ccGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  1:1213970/139‑1 (MQ=255)
       ccGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        >  1:933344/1‑139 (MQ=255)
                    aTCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        >  1:104685/1‑126 (MQ=255)
                    aTCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  2:104685/126‑1 (MQ=255)
                    aTCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAAcgc                                                                                                          <  1:342258/140‑1 (MQ=255)
                     tctcCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAAcgcg                                                                                                         >  1:465804/1‑140 (MQ=255)
                      ctcCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        >  1:1467554/1‑124 (MQ=255)
                      ctcCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAgcg                                                                                                                        <  2:1467554/124‑1 (MQ=255)
                         cacaAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCttt                                                                                                     >  2:625401/1‑140 (MQ=255)
                         cacaAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCttt                                                                                                     >  1:650935/1‑140 (MQ=255)
                             aGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGt                                                                                                 >  1:1354433/1‑140 (MQ=255)
                               ttCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTc                                                                                               >  1:89038/1‑140 (MQ=255)
                                 cAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAAc                                                                                                            <  1:727272/125‑1 (MQ=255)
                                 cAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAAc                                                                                                            >  2:727272/1‑125 (MQ=255)
                                 cAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCAt                                                                                             >  2:1467984/1‑140 (MQ=255)
                                 cAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCAt                                                                                             <  1:842755/140‑1 (MQ=255)
                                 cAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCAt                                                                                             <  1:1384861/140‑1 (MQ=255)
                                        ttCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAAt                                                                                      >  1:124381/1‑140 (MQ=255)
                                         tcatcaCTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATa                                                                                     >  2:258410/1‑140 (MQ=255)
                                         tcatcaCTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATa                                                                                     >  2:964808/1‑140 (MQ=255)
                                                tCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGt                                                                              <  2:585563/140‑1 (MQ=255)
                                                tCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGt                                                                              <  1:1311335/140‑1 (MQ=255)
                                                tCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGt                                                                              >  2:1202146/1‑140 (MQ=255)
                                                  aGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATAc                                                                                    >  2:518004/1‑132 (MQ=255)
                                                  aGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATAc                                                                                    <  1:518004/132‑1 (MQ=255)
                                                  aGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTa                                                                            >  1:1146860/1‑140 (MQ=255)
                                                    gAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAAt                                                                          >  2:295882/1‑140 (MQ=255)
                                                     aGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATg                                                                         <  1:1202146/140‑1 (MQ=255)
                                                       tgtCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCt                                                                       >  2:1056650/1‑140 (MQ=255)
                                                         tCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGt                                                                              <  2:1262448/131‑1 (MQ=255)
                                                         tCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGt                                                                              >  1:1262448/1‑131 (MQ=255)
                                                         tCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGc                                                                        >  1:1390803/1‑137 (MQ=255)
                                                         tCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAc                                                                     >  1:742271/1‑140 (MQ=255)
                                                         tCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAc                                                                     >  2:1190294/1‑140 (MQ=255)
                                                         tCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAc                                                                     <  2:1146860/140‑1 (MQ=255)
                                                         tCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAc                                                                     >  2:855891/1‑140 (MQ=255)
                                                         tCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGACGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGc                                                                        <  2:1390803/137‑1 (MQ=255)
                                                          cTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAcc                                                                    >  1:510326/1‑140 (MQ=255)
                                                           tGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAccc                                                                   <  1:1056650/140‑1 (MQ=255)
                                                           tGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAccc                                                                   <  1:964808/140‑1 (MQ=255)
                                                           tGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAccc                                                                   <  2:550093/140‑1 (MQ=255)
                                                           tGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTAccc                                                                   <  1:625401/140‑1 (MQ=255)
                                                            gTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCa                                                                  <  2:650935/140‑1 (MQ=255)
                                                             tttGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCAt                                                                 <  2:1058711/140‑1 (MQ=255)
                                                             tttGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCAt                                                                 <  1:1470947/140‑1 (MQ=255)
                                                                 aaCGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCt                                                             >  2:9921/1‑140 (MQ=255)
                                                                    ggCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTac                                                          <  1:295882/140‑1 (MQ=255)
                                                                    ggCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTac                                                          <  2:510326/140‑1 (MQ=255)
                                                                     gCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTaca                                                         >  2:706906/1‑140 (MQ=255)
                                                                      cAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTacac                                                        <  2:465804/140‑1 (MQ=255)
                                                                         gCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACctc                                                     <  1:855891/140‑1 (MQ=255)
                                                                                    cAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACa                                          <  1:1080072/140‑1 (MQ=255)
                                                                                     aGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACaa                                         >  1:116604/1‑140 (MQ=255)
                                                                                     aGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACaa                                         >  1:57167/1‑140 (MQ=255)
                                                                                           ataCTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCa                                   >  1:1084040/1‑140 (MQ=255)
                                                                                             aCTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATg                                      >  1:993979/1‑135 (MQ=255)
                                                                                             aCTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCAtt                                 >  2:100678/1‑140 (MQ=255)
                                                                                               tCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTAc                               <  2:116604/140‑1 (MQ=255)
                                                                                                 gAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACaa                             >  2:143638/1‑140 (MQ=255)
                                                                                                 gAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACaa                             >  2:708741/1‑140 (MQ=255)
                                                                                                  aGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAg                            >  1:220224/1‑140 (MQ=255)
                                                                                                  aGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAg                            <  2:220224/140‑1 (MQ=255)
                                                                                                   gCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAAt                                       >  2:566659/1‑128 (MQ=255)
                                                                                                   gCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAAt                                       <  1:566659/128‑1 (MQ=255)
                                                                                                   gCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGt                           >  1:214326/1‑140 (MQ=255)
                                                                                                    cATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTa                          >  2:1414733/1‑140 (MQ=255)
                                                                                                    cATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTa                          <  2:1089142/140‑1 (MQ=255)
                                                                                                    cATGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTa                          <  1:708741/140‑1 (MQ=255)
                                                                                                     aTGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTAt                         <  2:1084040/140‑1 (MQ=255)
                                                                                                      tGAGACGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATc                        >  1:597870/1‑140 (MQ=255)
                                                                                                        agaCGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGc                      >  2:1340082/1‑140 (MQ=255)
                                                                                                         gaCGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTc                                    >  1:792221/1‑125 (MQ=255)
                                                                                                         gaCGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTc                                    <  2:792221/125‑1 (MQ=255)
                                                                                                         gaCGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCa                     <  1:563792/140‑1 (MQ=255)
                                                                                                         gaCGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCa                     <  2:124381/140‑1 (MQ=255)
                                                                                                         gaCGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCa                     <  1:258410/140‑1 (MQ=255)
                                                                                                         gaCGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCa                     <  1:1340082/140‑1 (MQ=255)
                                                                                                           cGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACt                   <  2:605797/140‑1 (MQ=255)
                                                                                                           cGAAGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACt                   <  1:1190294/140‑1 (MQ=255)
                                                                                                             aaGCGCTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACTac                 >  2:245360/1‑140 (MQ=255)
                                                                                                                cgcTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACTacaac              <  2:186812/140‑1 (MQ=255)
                                                                                                                cgcTTCAGAAGGAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACTacaac              <  2:57167/140‑1 (MQ=255)
                                                                                                                           gAGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACTACAACATGCTTAGGGc   <  2:1196373/140‑1 (MQ=255)
                                                                                                                            aGTTACACCCA‑TTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACTACAACATGCTTAGGGCa  <  1:245360/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                 
TACGAAGCCGTTCTTTCACTATCTCCACAAGTTCAGCATCTTCATCACTCAGGAGTGTCTGTTTGAACGGCAAGCGTTCATTGTCAGCGATATACTCGAGCATGAGACGAAGCGCTTCAGAAGGAGTTACACCCATTTTTTCAAGCGCGGCGTAAGAACGCGCTTTAAGTTCATCGTCAATACGCAGGTTAATGCTACCCATGTCTTACACCTCTTGTAATTACAAATGTCATTACAAGTATCGCACTACAACATGCTTAGGGCA  >  NC_000913/1645671‑1645935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A