Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,895,983 C→T S393S (AGC→AGT)  pabB → aminodeoxychorismate synthase subunit 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,895,9830CT100.0% 277.1 / NA 81S393S (AGC→AGT) pabBaminodeoxychorismate synthase subunit 1
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (35/46);  total (35/46)

CCAGAACAGTTACACGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGCATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGGAAGAAGCGGAATATCAGG  >  NC_000913/1895849‑1896119
                                                                                                                                      |                                                                                                                                        
ccAGAACAGTTACACGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTgg                                                                                                                                     <  1:345436/140‑1 (MQ=255)
    aaCAGTTACACGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTAt                                                                                                                                 <  2:1462849/140‑1 (MQ=255)
     aCAGTTACACGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTAt                                                                                                                                 <  1:751626/139‑1 (MQ=255)
     aCAGTTACACGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTAt                                                                                                                                 >  2:751626/1‑139 (MQ=255)
        gTTACACGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGa                                                                                                                             >  2:1285782/1‑140 (MQ=255)
         ttACACGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAg                                                                                                                            >  2:1020470/1‑140 (MQ=255)
              cGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTgg                                                                                                                                     >  2:320116/1‑126 (MQ=255)
              cGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTgg                                                                                                                                     <  1:320116/126‑1 (MQ=255)
                 cAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTgg                                                                                                                                     >  1:455215/1‑123 (MQ=255)
                 cAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTgg                                                                                                                                     <  2:455215/123‑1 (MQ=255)
                 cAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCg                                                                                                                    <  2:528666/140‑1 (MQ=255)
                 cAGCGATCTGCCGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCg                                                                                                                    >  1:1439377/1‑140 (MQ=255)
                  aGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCttt                                                                                                                        >  2:1008470/1‑135 (MQ=255)
                  aGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCttt                                                                                                                        <  1:1008470/135‑1 (MQ=255)
                   gCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGc                                                                                                                  >  2:560661/1‑140 (MQ=255)
                   gCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGc                                                                                                                  >  1:1146253/1‑140 (MQ=255)
                   gCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGc                                                                                                                  >  2:1101039/1‑140 (MQ=255)
                    cGATCTGCCGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCa                                                                                                                 <  2:1439377/140‑1 (MQ=255)
                     gATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCaa                                                                                                                <  2:314506/140‑1 (MQ=255)
                      aTCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAAc                                                                                                               <  1:560661/140‑1 (MQ=255)
                      aTCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAAc                                                                                                               <  1:243152/140‑1 (MQ=255)
                      aTCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAAc                                                                                                               <  1:1063292/140‑1 (MQ=255)
                       tCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACa                                                                                                              <  2:1422267/140‑1 (MQ=255)
                         tgctgcGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATg                                                                                                            <  2:620315/140‑1 (MQ=255)
                         tgctgcGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATg                                                                                                            <  2:289335/140‑1 (MQ=255)
                           ctgcGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGa                                                                                                          <  1:1285782/140‑1 (MQ=255)
                            tgcGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGAt                                                                                                         <  1:328391/140‑1 (MQ=255)
                            tgcGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGAt                                                                                                         <  2:101143/140‑1 (MQ=255)
                              cgcgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATAc                                                                                                       >  1:11091/1‑140 (MQ=255)
                              cgcgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATAc                                                                                                       <  1:1014380/140‑1 (MQ=255)
                              cgcgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATAc                                                                                                       <  1:1101039/140‑1 (MQ=255)
                              cgcgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATAc                                                                                                       <  2:165541/140‑1 (MQ=255)
                              cgcgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATAc                                                                                                       <  2:74965/140‑1 (MQ=255)
                              cgagcagcaTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCCGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATAc                                                                                                       <  2:805460/137‑1 (MQ=255)
                                cgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCa                                                                                                     >  2:1219232/1‑140 (MQ=255)
                                cgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCa                                                                                                     <  2:1146253/140‑1 (MQ=255)
                                cgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCa                                                                                                     >  1:240755/1‑140 (MQ=255)
                                cgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCa                                                                                                     >  1:527798/1‑140 (MQ=255)
                                cgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCa                                                                                                     <  1:924456/140‑1 (MQ=255)
                                cgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCa                                                                                                     <  1:1020470/140‑1 (MQ=255)
                                cgcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCa                                                                                                     >  1:780382/1‑140 (MQ=255)
                                 gcAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAg                                                                                                    <  2:527798/140‑1 (MQ=255)
                                   aGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATAc                                                                                                       <  2:604711/135‑1 (MQ=255)
                                   aGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATAc                                                                                                       >  1:604711/1‑135 (MQ=255)
                                   aGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTa                                                                                                  >  2:1067251/1‑140 (MQ=255)
                                             ggtggCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCg                                                                                        >  1:74973/1‑140 (MQ=255)
                                              gtggCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGc                                                                                       <  1:287264/140‑1 (MQ=255)
                                                ggCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCAc                                                                                     >  2:194101/1‑140 (MQ=255)
                                                 gCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACg                                                                                    >  1:612997/1‑140 (MQ=255)
                                                  cTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGc                                                                                   >  1:783725/1‑140 (MQ=255)
                                                     aaTAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTCCTATCCGCACGCTGa                                                                                <  2:641787/140‑1 (MQ=255)
                                                     aaTAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGa                                                                                <  2:1332515/140‑1 (MQ=255)
                                                     aaTAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGa                                                                                <  1:1267121/140‑1 (MQ=255)
                                                     aaTAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGa                                                                                <  2:647173/140‑1 (MQ=255)
                                                             gggCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCAtt                                                                        >  1:804852/1‑140 (MQ=255)
                                                                 tCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACg                                                                    <  2:780382/140‑1 (MQ=255)
                                                                   cGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGa                                                                  >  2:1146330/1‑140 (MQ=255)
                                                                   cGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGa                                                                  >  2:385311/1‑140 (MQ=255)
                                                                      aaGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACaa                                                               <  2:612997/140‑1 (MQ=255)
                                                                                   ggAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTtctgctctg                                                  >  2:504468/1‑140 (MQ=255)
                                                                                     aaaTTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTgcg                                                <  2:783725/140‑1 (MQ=255)
                                                                                     aaaTTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTgcg                                                <  1:904459/140‑1 (MQ=255)
                                                                                         tATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTgcgggcg                                            <  2:818104/140‑1 (MQ=255)
                                                                                            cgacgaACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTg                                         >  1:949892/1‑140 (MQ=255)
                                                                                              acgaACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGa                                       >  2:230067/1‑140 (MQ=255)
                                                                                               cgaACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGAC‑AATTTTCTGCTCTGCGGGCGGTGGAAt                                     >  2:860607/1‑140 (MQ=255)
                                                                                                   cTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGt                                  <  2:240755/140‑1 (MQ=255)
                                                                                                        aCCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTgcggg                                              <  2:892167/123‑1 (MQ=255)
                                                                                                        aCCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTgcggg                                              >  1:892167/1‑123 (MQ=255)
                                                                                                        aCCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCg                             <  2:450417/140‑1 (MQ=255)
                                                                                                        aCCGCAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCg                             <  1:504468/140‑1 (MQ=255)
                                                                                                            cAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAg                         >  2:1233746/1‑140 (MQ=255)
                                                                                                            cAGCGACGCAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAg                         >  2:796596/1‑140 (MQ=255)
                                                                                                                    cAATGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGgaag                 >  1:957914/1‑140 (MQ=255)
                                                                                                                     aaTGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGgaaga                <  1:1219232/140‑1 (MQ=255)
                                                                                                                     aaTGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGgaaga                <  1:1146330/140‑1 (MQ=255)
                                                                                                                      aTGCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGgaagaa               >  2:934201/1‑140 (MQ=255)
                                                                                                                        gCCTGGTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGGAAGAAGc             <  1:230067/140‑1 (MQ=255)
                                                                                                                             gTGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGGAAGAAGCGGAat        >  2:1116319/1‑140 (MQ=255)
                                                                                                                              tGCGGCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGGAAGAAGCGGAata       <  2:957914/140‑1 (MQ=255)
                                                                                                                                 ggCAGTATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGGAAGAAGCGGAATATCa    >  2:1321835/1‑140 (MQ=255)
                                                                                                                                   cagtaTTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGGAAGAAGCGGAATATCAgg  >  2:127778/1‑140 (MQ=255)
                                                                                                                                   cagtaTTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGGAAGAAGCGGAATATCAgg  >  2:973203/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CCAGAACAGTTACACGCCAGCGATCTGCTGCGCGCAGCTTTTCCTGGTGGCTCAATAACCGGGGCTCCGAAAGTACGGGCTATGGAAATTATCGACGAACTGGAACCGCAGCGACGCAATGCCTGGTGCGGCAGCATTGGCTATTTGAGCTTTTGCGGCAACATGGATACCAGTATTACTATCCGCACGCTGACTGCCATTAACGGACAAATTTTCTGCTCTGCGGGCGGTGGAATTGTCGCCGATAGCCAGGAAGAAGCGGAATATCAGG  >  NC_000913/1895849‑1896119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A