Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,990,393 G→A G238D (GGC→GAC)  tyrP → tyrosine:H(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,990,3930GA100.0% 267.5 / NA 75G238D (GGC→GAC) tyrPtyrosine:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (43/32);  total (43/32)

TTTGGTTTTCACGGTAGCGTGCCGAGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGGCAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCATTTATTTGCTGATTTAGCCCT  >  NC_000913/1990260‑1990528
                                                                                                                                     |                                                                                                                                       
tttGGTTTTCACGGTAGCGTGCCGAGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCAt                                                                                                                                   >  1:781741/1‑140 (MQ=255)
  tGGTTTTCACGGTAGCGTGCCGAGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTg                                                                                                                                 <  2:299123/140‑1 (MQ=255)
        tCACGGTAGCGTGCCGAGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTcaa                                                                                                                           <  1:878835/140‑1 (MQ=255)
         cACGGTAGCGTGCCGAGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTcaac                                                                                                                          <  2:760533/140‑1 (MQ=255)
         cACGGTAGCGTGCCGAGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTcaac                                                                                                                          <  1:950896/140‑1 (MQ=255)
          aCGGTAGCGTGCCGAGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTcaaca                                                                                                                         >  1:258080/1‑140 (MQ=255)
                        aGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGAtt                                                                                                           <  2:848233/140‑1 (MQ=255)
                             tGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTgg                                                                                                      <  1:1389085/140‑1 (MQ=255)
                                    tataTGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTg                                                                                                          <  2:661597/129‑1 (MQ=255)
                                    tataTGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTg                                                                                                          >  1:661597/1‑129 (MQ=255)
                                    tataTGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCa                                                                                               >  2:727113/1‑140 (MQ=255)
                                      tatGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATg                                                                                             >  1:856592/1‑140 (MQ=255)
                                      tatGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATg                                                                                             <  2:319687/140‑1 (MQ=255)
                                      tatGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATg                                                                                             >  1:229927/1‑140 (MQ=255)
                                       atggatggCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGc                                                                                            <  1:794094/140‑1 (MQ=255)
                                        tggatggCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCt                                                                                           <  1:967788/140‑1 (MQ=255)
                                           atggCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATg                                                                                             <  1:852804/135‑1 (MQ=255)
                                           atggCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATg                                                                                             >  2:852804/1‑135 (MQ=255)
                                           atggCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGa                                                                                        >  1:173415/1‑140 (MQ=255)
                                             ggCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGAtt                                                                                      >  1:96296/1‑140 (MQ=255)
                                             ggCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGAtt                                                                                      >  1:42613/1‑140 (MQ=255)
                                             ggCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGAtt                                                                                      >  2:1261191/1‑140 (MQ=255)
                                               cAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTaa                                                                                    <  2:856592/140‑1 (MQ=255)
                                                aaCATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTaaa                                                                                   >  1:712949/1‑140 (MQ=255)
                                                aaCATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTaaa                                                                                   <  2:781741/140‑1 (MQ=255)
                                                aaCATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTaaa                                                                                   >  2:361415/1‑140 (MQ=255)
                                                   aTTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACgg                                                                                <  2:96296/140‑1 (MQ=255)
                                                     tCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGc                                                                              <  2:229927/140‑1 (MQ=255)
                                                              aCGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAgg                                                                     >  2:90237/1‑140 (MQ=255)
                                                              aCGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAgg                                                                     <  2:240856/140‑1 (MQ=255)
                                                               cGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTaaa                                                                                   >  2:480905/1‑125 (MQ=255)
                                                               cGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTaaa                                                                                   <  1:480905/125‑1 (MQ=255)
                                                               cGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGc                                                                    >  2:418229/1‑140 (MQ=255)
                                                               cGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGc                                                                    >  2:88610/1‑140 (MQ=255)
                                                               cGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGc                                                                    >  2:20920/1‑140 (MQ=255)
                                                                 cTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGt                                                                  >  1:1383239/1‑140 (MQ=255)
                                                                     gtgtTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTAcg                                                              >  1:792656/1‑140 (MQ=255)
                                                                       gtTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCCACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTAcgcg                                                            <  2:1383239/140‑1 (MQ=255)
                                                                       gtTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTAcgcg                                                            <  1:1261191/140‑1 (MQ=255)
                                                                         ttATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGaa                                                          >  2:466931/1‑140 (MQ=255)
                                                                              aTCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAAtggt                                                     >  2:1055338/1‑140 (MQ=255)
                                                                              aTCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAAtggt                                                     <  1:361415/140‑1 (MQ=255)
                                                                              aTCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAAtggt                                                     >  1:20925/1‑140 (MQ=255)
                                                                              aTCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAAtggt                                                     >  2:1142446/1‑140 (MQ=255)
                                                                              aTCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAAtggt                                                     >  1:1404427/1‑140 (MQ=255)
                                                                                cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAAtggtgg                                                   >  1:985791/1‑140 (MQ=255)
                                                                                 ggTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGc                                                  <  1:20920/140‑1 (MQ=255)
                                                                                  gTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGcc                                                 >  2:651488/1‑140 (MQ=255)
                                                                                    aGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCctc                                               <  2:20925/140‑1 (MQ=255)
                                                                                      tGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTAcgcg                                                            >  2:804001/1‑125 (MQ=255)
                                                                                      tGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTAcgcg                                                            <  1:804001/125‑1 (MQ=255)
                                                                                      tGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCtctc                                             >  2:256374/1‑140 (MQ=255)
                                                                                        cGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCg                                           <  1:651488/140‑1 (MQ=255)
                                                                                        cGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCg                                           >  2:720462/1‑140 (MQ=255)
                                                                                         gATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGc                                          <  2:712949/140‑1 (MQ=255)
                                                                                           tCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCAt                                        >  2:189172/1‑140 (MQ=255)
                                                                                             ccccTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCctc                                               <  2:1214381/131‑1 (MQ=255)
                                                                                             ccccTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCctc                                               >  1:1214381/1‑131 (MQ=255)
                                                                                             ccccTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGt                                      >  2:194773/1‑140 (MQ=255)
                                                                                             ccccTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGt                                      <  2:313793/140‑1 (MQ=255)
                                                                                                       cATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCa                            >  1:213354/1‑140 (MQ=255)
                                                                                                       cATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCa                            >  2:366176/1‑140 (MQ=255)
                                                                                                       cATATATTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCa                            >  2:1446771/1‑140 (MQ=255)
                                                                                                         tatatTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGt                          >  2:1449571/1‑140 (MQ=255)
                                                                                                         tatatTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGt                          >  2:764371/1‑140 (MQ=255)
                                                                                                         tatatTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGt                          >  1:815122/1‑140 (MQ=255)
                                                                                                            atTTTCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCa                       <  1:189172/140‑1 (MQ=255)
                                                                                                              tttCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCatt                     <  2:1404427/140‑1 (MQ=255)
                                                                                                                tCTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCattta                   >  2:692066/1‑140 (MQ=255)
                                                                                                                 cTGGCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCatttat                  >  2:1259366/1‑140 (MQ=255)
                                                                                                                    gCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCt                                >  2:1321889/1‑123 (MQ=255)
                                                                                                                    gCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCt                                <  1:1321889/123‑1 (MQ=255)
                                                                                                                    gCAGGTGGCGACGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCATTTATTTg               <  2:985791/140‑1 (MQ=255)
                                                                                                                              aCGCTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCATTTATTTGCTGATTTAGc     >  2:418289/1‑140 (MQ=255)
                                                                                                                                 cTTGACAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCATTTATTTGCTGATTTAGCCCt  <  2:896967/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                       
TTTGGTTTTCACGGTAGCGTGCCGAGTATTGTCAGCTATATGGATGGCAACATTCGTAAGCTACGCTGGGTGTTTATAATCGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGGCAGCATTGATTCAACAACCTTTATGGGATTGCTGGCTAATCATGCTGGATTAAACGGGCTGTTACAGGCGTTACGCGAAATGGTGGCCTCTCCGCATGTTGAGCTGGCAGTGCATTTATTTGCTGATTTAGCCCT  >  NC_000913/1990260‑1990528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A