Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F28 I1 R1
|
151 |
87.4 |
2971636 |
99.2% |
2947862 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,498,786 |
C→T |
A39V (GCG→GTG) |
ypdA → |
sensory histidine kinase YpdA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,498,786 | 0 | C | T | 98.1%
| 337.0
/ ‑2.8
| 106 | A39V (GCG→GTG) | ypdA | sensory histidine kinase YpdA |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (54/50); total (55/51) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-01 |
Only 100 of 109 total aligned reads displayed.
TAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGCGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGATTC > NC_000913/2498649‑2498920
|
tAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGgtgc > 1:693469/1‑140 (MQ=255)
tAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGgtgc > 2:1360156/1‑140 (MQ=255)
aaTCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCa < 1:766751/140‑1 (MQ=255)
aaTCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCa < 1:419722/140‑1 (MQ=255)
aaTCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCa < 2:755774/140‑1 (MQ=255)
aaTCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCa < 2:892409/140‑1 (MQ=255)
ccTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTc < 2:351893/140‑1 (MQ=255)
tATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTcccc > 2:1451068/1‑140 (MQ=255)
tATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTcccc > 1:154262/1‑140 (MQ=255)
aTTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTccc > 1:855792/1‑138 (MQ=255)
aTTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTccc < 2:855792/138‑1 (MQ=255)
aTTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCa > 2:780770/1‑140 (MQ=255)
gagTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGa > 2:479252/1‑140 (MQ=255)
agTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGaa > 2:694402/1‑140 (MQ=255)
agTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGaa > 2:1159791/1‑140 (MQ=255)
agTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGCGCACTCCCCAAAAGaa > 2:659774/1‑140 (MQ=255)
tCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAAtt > 1:597239/1‑140 (MQ=255)
cACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTg > 1:1161107/1‑140 (MQ=255)
aCCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGc > 2:28120/1‑140 (MQ=255)
cccGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCt > 1:743589/1‑140 (MQ=255)
cccGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCt < 2:826443/140‑1 (MQ=255)
cccGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCt > 2:573587/1‑140 (MQ=255)
cccGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCt > 1:924030/1‑140 (MQ=255)
cccGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCt > 2:340338/1‑140 (MQ=255)
cccGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGGTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCt > 2:662543/1‑140 (MQ=255)
cACGAAATTTTCAACATGCTGTTGGCGGTCTTCGATCGGGCAGCTTTAATGCTTTTCTGCCTGTTCTTTCTAATCCGTACCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGt < 2:123774/140‑1 (MQ=255)
aaTATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCg > 2:849523/1‑140 (MQ=255)
ttCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCAt > 1:863773/1‑140 (MQ=255)
cAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCAttt < 1:780770/140‑1 (MQ=255)
aCATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTtc > 2:719472/1‑140 (MQ=255)
aTGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTtctc > 2:816672/1‑140 (MQ=255)
aTGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTtctc < 1:816672/140‑1 (MQ=255)
aTGCTGCGGGCGGTTTTCGATGGGGCAGCTTTAATGCTTATCTGCCTTTTTTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACCCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTtctc < 2:693469/140‑1 (MQ=255)
gctgctGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGc > 2:560950/1‑140 (MQ=255)
gctgctGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGc > 1:387946/1‑140 (MQ=255)
tgctgGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTg > 2:357765/1‑140 (MQ=255)
gctgGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGt < 1:497971/140‑1 (MQ=255)
gctgGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGt > 2:680795/1‑140 (MQ=255)
cGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGcc < 1:560950/140‑1 (MQ=255)
cGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGcc < 2:284967/140‑1 (MQ=255)
cGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGcc < 1:1159791/140‑1 (MQ=255)
cGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGcc < 1:304348/140‑1 (MQ=255)
cGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGcc < 1:340338/140‑1 (MQ=255)
ggTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGccc < 2:597239/140‑1 (MQ=255)
ggTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGccc < 1:74274/140‑1 (MQ=255)
tCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTg < 1:1399077/140‑1 (MQ=255)
tCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTg > 2:1308027/1‑140 (MQ=255)
tCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTg > 1:49117/1‑140 (MQ=255)
cTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGt > 1:178476/1‑140 (MQ=255)
cTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGt > 2:193851/1‑140 (MQ=255)
ggCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCt > 2:901397/1‑140 (MQ=255)
ggCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCt > 1:50971/1‑140 (MQ=255)
tAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGc < 1:28120/140‑1 (MQ=255)
aaTGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg < 1:479252/140‑1 (MQ=255)
aaTGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg < 1:193851/140‑1 (MQ=255)
aaTGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg < 1:1252012/140‑1 (MQ=255)
aaTGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg < 1:1360156/140‑1 (MQ=255)
aaTGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGCGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg < 1:659774/140‑1 (MQ=255)
aTGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg > 2:419581/1‑139 (MQ=255)
aTGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg < 1:419581/139‑1 (MQ=255)
tATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCGCTGTTCAGCACCTGGTCCGGCGTTCCCg > 2:1040070/1‑140 (MQ=255)
tATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg < 2:145177/134‑1 (MQ=255)
tATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg > 1:145177/1‑134 (MQ=255)
tATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCg > 1:207222/1‑134 (MQ=255)
tATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCg > 1:1011159/1‑140 (MQ=255)
tCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTa > 1:1160642/1‑140 (MQ=255)
tGCCTTTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGa < 2:1396719/140‑1 (MQ=255)
ccTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCTGCGTTCCCGTAGAAg > 1:1465202/1‑140 (MQ=255)
cTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAgg > 1:1467574/1‑140 (MQ=255)
ttctttctCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTc > 2:1411449/1‑140 (MQ=255)
tctttctCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCg < 2:863773/140‑1 (MQ=255)
ctcATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGt < 1:1411449/140‑1 (MQ=255)
ctcATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGt > 1:1155180/1‑140 (MQ=255)
ctcATCCGTACCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGt < 2:563138/140‑1 (MQ=255)
tcATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTg < 2:566535/140‑1 (MQ=255)
tcATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTg < 2:1381846/140‑1 (MQ=255)
tcATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTg < 1:1040070/140‑1 (MQ=255)
cATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGa < 2:49117/140‑1 (MQ=255)
aTCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGaa < 2:1160642/140‑1 (MQ=255)
tCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGa > 2:912203/1‑138 (MQ=255)
tCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGa < 1:912203/138‑1 (MQ=255)
tCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAac < 1:662543/140‑1 (MQ=255)
tCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAac > 2:1405158/1‑140 (MQ=255)
tCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAac > 2:1143585/1‑140 (MQ=255)
ccGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAacg < 2:1161107/140‑1 (MQ=255)
aTCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAacgtacg > 2:866316/1‑140 (MQ=255)
ccTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGtatta < 1:1405158/140‑1 (MQ=255)
cTGTTTCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGtattat > 2:1035886/1‑140 (MQ=255)
tttCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATcgc > 2:353438/1‑140 (MQ=255)
tttCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATcgc > 2:1046816/1‑140 (MQ=255)
tttCGCGAACTGTTGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATcgc > 2:1346597/1‑140 (MQ=255)
gAACTTTTGCCAAAGTCGGGGCCCCCCCCAAAAGAATTGCCCGCCGTTACCGGCATTTTCTCGCTGTTCGCCCTGGTCCGCCCCTGGTCCGGCGTTCCCGTAAAAGGCTTGCTTGTGAAAGTTCGTTTTATCGCGGTTAt < 2:387946/140‑1 (MQ=255)
ttGCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCcgg > 1:702286/1‑140 (MQ=255)
gCACAAGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCcggcg < 1:1046816/140‑1 (MQ=255)
aaGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGAt < 1:1346597/140‑1 (MQ=255)
aaGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGAt < 1:1308027/140‑1 (MQ=255)
aaGTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGAt < 1:1049027/140‑1 (MQ=255)
gTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGATTc > 2:1250688/1‑140 (MQ=255)
gTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGATTc > 2:158046/1‑140 (MQ=255)
gTCGGTGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGATTc > 2:239141/1‑140 (MQ=255)
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TAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGCGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGATTC > NC_000913/2498649‑2498920
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
