Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,649,765 Δ1 bp coding (2523/4962 nt) yfhM ← alpha2‑macroglobulin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,649,7620T.98.2% 223.3 / ‑1.9 56coding (2526/4962 nt)yfhMalpha2‑macroglobulin
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base . (17/38);  total (17/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

GCTTCTCGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGTTTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCT  >  NC_000913/2649623‑2649891
                                                                                                                                           |                                                                                                                                 
gCTTCTCGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGt                                                                                                                                   >  2:517608/1‑140 (MQ=255)
gCTTCTCGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGt                                                                                                                                   >  2:256328/1‑140 (MQ=255)
     tcGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGtttggc                                                                                                                              >  2:337040/1‑137 (MQ=255)
     tcGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGtttggc                                                                                                                              >  2:662575/1‑137 (MQ=255)
     tcGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGtttggc                                                                                                                              >  2:1442126/1‑137 (MQ=255)
     tcGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGtttggc                                                                                                                              >  2:317752/1‑137 (MQ=255)
     tcGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGtt                                                                                                                                  <  2:257431/136‑1 (MQ=255)
     tcGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGtt                                                                                                                                  >  1:257431/1‑136 (MQ=255)
      cGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGtttggcg                                                                                                                             <  1:324255/140‑5 (MQ=255)
                aGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCg                                                                                                                  <  1:618062/140‑1 (MQ=255)
                 gTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCga                                                                                                                 <  1:327660/140‑1 (MQ=255)
                      ggCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGAttt                                                                                                            <  1:1285799/140‑1 (MQ=255)
                       gCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTa                                                                                                           >  2:495129/1‑140 (MQ=255)
                       gCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTa                                                                                                           >  1:161094/1‑140 (MQ=255)
                       gCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTa                                                                                                           >  1:727297/1‑140 (MQ=255)
                       gCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTa                                                                                                           >  1:637082/1‑140 (MQ=255)
                       gCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGCAGCGAGATTTa                                                                                                           >  1:989121/1‑140 (MQ=255)
                           tAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGc                                                                                                       <  1:662575/140‑1 (MQ=255)
                            aaTTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGcc                                                                                                      <  2:989121/140‑1 (MQ=255)
                             aTTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCa                                                                                                     <  2:192224/140‑1 (MQ=255)
                              ttttCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAg                                                                                                    <  1:337040/140‑1 (MQ=255)
                              ttttCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAg                                                                                                    <  1:1034392/140‑1 (MQ=255)
                              ttttCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAg                                                                                                    <  1:18141/140‑1 (MQ=255)
                               tttCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAgg                                                                                                   <  1:256328/140‑1 (MQ=255)
                                ttCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGa                                                                                                  <  2:721525/140‑1 (MQ=255)
                                 tCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGAttt                                                                                                            <  2:118045/129‑1 (MQ=255)
                                 tCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGAttt                                                                                                            >  1:118045/1‑129 (MQ=255)
                                   aCGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGt                                                                                               >  2:686694/1‑140 (MQ=255)
                                        tAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTaccac                                                                                          <  1:131935/140‑1 (MQ=255)
                                        tAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTaccac                                                                                          <  2:637082/140‑1 (MQ=255)
                                           tGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAg                                                                                       <  1:686694/140‑1 (MQ=255)
                                             gTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCg                                                                                     <  1:413032/140‑1 (MQ=255)
                                             gTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCg                                                                                     <  1:189281/140‑1 (MQ=255)
                                             gTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCg                                                                                     <  2:63188/140‑1 (MQ=255)
                                              ttGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGTTTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCg                                                                                     <  2:32509/140‑1 (MQ=255)
                                               tGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTa                                                                                   <  1:1444836/140‑1 (MQ=255)
                                                gATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTAc                                                                                  <  2:116622/140‑1 (MQ=255)
                                                gATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTAc                                                                                  <  1:1442126/140‑1 (MQ=255)
                                                 aTTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGGGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACt                                                                                 >  2:1297665/1‑140 (MQ=255)
                                                 aTTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACt                                                                                 >  2:1215529/1‑140 (MQ=255)
                                                 aTTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACt                                                                                 <  2:257257/140‑1 (MQ=255)
                                                     ggACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTaaa                                                                             >  2:641264/1‑140 (MQ=255)
                                                       aCGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTAc                                                                                  <  2:516068/133‑1 (MQ=255)
                                                       aCGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTAc                                                                                  >  1:516068/1‑133 (MQ=255)
                                                       aCGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATa                                                                           <  1:1297665/140‑1 (MQ=255)
                                                        cGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATAc                                                                          <  2:727297/140‑1 (MQ=255)
                                                                  cTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGAc                                                                <  1:495129/140‑1 (MQ=255)
                                                                    ggTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGa                                                              <  2:1482478/140‑1 (MQ=255)
                                                                               cgcCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGtttt                                                   >  2:1163785/1‑140 (MQ=255)
                                                                                         aGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGa                                         <  1:317752/140‑1 (MQ=255)
                                                                                          ggCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGaa                                        <  1:1163785/140‑1 (MQ=255)
                                                                                          ggCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGaa                                        <  2:161094/140‑1 (MQ=255)
                                                                                                    ttCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATc                              <  1:743972/140‑1 (MQ=255)
                                                                                                           ccAAGCGACAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCt                       >  2:517884/1‑140 (MQ=255)
                                                                                                             aaGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTg                     <  2:329957/140‑1 (MQ=255)
                                                                                                              aGCGGCAGATGCAACACACCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGa                    >  2:613763/1‑140 (MQ=255)
                                                                                                                           acacacCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCaa       >  2:404282/1‑140 (MQ=255)
                                                                                                                            cacacCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAAt      <  1:517884/140‑1 (MQ=255)
                                                                                                                              cacCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAAtct    <  1:404282/140‑1 (MQ=255)
                                                                                                                              cacCAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAAtct    <  1:1215529/140‑1 (MQ=255)
                                                                                                                                ccAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATctct  >  2:143987/1‑140 (MQ=255)
                                                                                                                                ccAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATctct  <  1:613763/140‑1 (MQ=255)
                                                                                                                                 cAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGa              <  1:404843/127‑1 (MQ=255)
                                                                                                                                 cAACCGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGa              >  2:404843/1‑127 (MQ=255)
                                                                                                                                    ccGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAAt      >  2:511661/1‑132 (MQ=255)
                                                                                                                                    ccGCGCG‑TTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAAt      <  1:511661/132‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                 
GCTTCTCGCCATTTTTAGTGCTGGCTTTAATTTTCACGGTTAATGGTTGATTGGGACGCATTTTTGCTGGTGTTTCCAGCGCCAGATCGAGGCGACGGTTTTCATCGCCAAGCGGCAGATGCAACACACCAACCGCGCGTTTTGGCGTCGCGGAGCGAGATTTATCGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCT  >  NC_000913/2649623‑2649891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A