Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F28 I1 R1
|
151 |
87.4 |
2971636 |
99.2% |
2947862 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,116,591 |
G→A |
A841V (GCC→GTC) |
yghJ ← |
putative lipoprotein YghJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,116,591 | 0 | G | A | 99.1%
| 372.7
/ ‑6.2
| 111 | A841V (GCC→GTC) | yghJ | putative lipoprotein YghJ |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (55/54); total (55/56) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 111 total aligned reads displayed.
GGAACCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGGCCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATC > NC_000913/3116453‑3116727
|
ggAACCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGGc < 2:860542/140‑1 (MQ=255)
ccccGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCtcat > 2:956435/1‑140 (MQ=255)
tGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATa < 2:1110244/140‑1 (MQ=255)
tGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATa > 1:911652/1‑140 (MQ=255)
ggACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGc > 1:153360/1‑140 (MQ=255)
ggACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGc > 1:1433942/1‑140 (MQ=255)
gACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCtc < 1:1035194/127‑1 (MQ=255)
gACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCtc > 2:1035194/1‑127 (MQ=255)
gATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATaa < 1:956435/140‑1 (MQ=255)
gATATTCCAGGCAGTTCACCTCATAGTGATATGCCGGATTAGCACCCTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATaa < 2:1476542/140‑1 (MQ=255)
atatTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAAc > 1:711912/1‑140 (MQ=255)
tatTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAAcg > 1:845815/1‑140 (MQ=255)
tatTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAAcg > 1:1178024/1‑140 (MQ=255)
ccAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGtt < 1:1462502/140‑1 (MQ=255)
ccAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGtt > 2:1236369/1‑140 (MQ=255)
ccAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGtt < 1:1236369/140‑1 (MQ=255)
cAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGttt > 2:569974/1‑140 (MQ=255)
aGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTc > 2:580662/1‑140 (MQ=255)
aGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCTCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGt < 1:1391445/140‑1 (MQ=255)
aGTTGACCTCATAGTGATATGCCGGATTAGCACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGt < 2:911652/140‑1 (MQ=255)
ttGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGttt > 2:25666/1‑140 (MQ=255)
ttGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGttt < 1:667648/140‑1 (MQ=255)
ttGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGttt < 2:979879/140‑1 (MQ=255)
gACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTg > 2:556330/1‑139 (MQ=255)
gACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTg < 1:556330/139‑1 (MQ=255)
gACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGc > 1:435081/1‑140 (MQ=255)
gACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGc > 2:169622/1‑140 (MQ=255)
aCCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTg > 1:340495/1‑138 (MQ=255)
aCCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTg < 2:340495/138‑1 (MQ=255)
aCCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGcc < 2:153360/140‑1 (MQ=255)
ccTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCa < 1:1121147/140‑1 (MQ=255)
cTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCAt < 2:1178024/140‑1 (MQ=255)
tCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAAcg < 2:158073/122‑1 (MQ=255)
tCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAAcg > 1:158073/1‑122 (MQ=255)
atatGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCtt > 2:403538/1‑140 (MQ=255)
atatGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCtt > 2:1379494/1‑140 (MQ=255)
gCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTg < 1:409247/123‑1 (MQ=255)
gCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTg > 2:409247/1‑123 (MQ=255)
gCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTccag > 1:514089/1‑140 (MQ=255)
gCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTccag > 2:653942/1‑140 (MQ=255)
cGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTccagcc > 1:226854/1‑140 (MQ=255)
gATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTccagccag < 2:514089/140‑1 (MQ=255)
aTTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCcagccagc < 2:194596/140‑1 (MQ=255)
aTTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCcagccagc < 2:711912/140‑1 (MQ=255)
aTTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCcagccagc < 1:809454/140‑1 (MQ=255)
aTTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCcagccagc > 2:699002/1‑140 (MQ=255)
tctTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTc > 2:1142036/1‑140 (MQ=255)
tctTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTc < 2:814350/140‑1 (MQ=255)
tttCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCa < 2:435081/140‑1 (MQ=255)
tttCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCa > 1:119556/1‑140 (MQ=255)
tttCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCa > 2:1061589/1‑140 (MQ=255)
tCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCcagccagc < 1:1088067/126‑1 (MQ=255)
tCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGc > 1:707553/1‑140 (MQ=255)
cAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTccagccag > 2:1084583/1‑124 (MQ=255)
cAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTccagccag < 1:1084583/124‑1 (MQ=255)
cAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCt > 1:170536/1‑140 (MQ=255)
ccGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGt < 2:1433942/140‑1 (MQ=255)
ccGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGt < 1:1061589/140‑1 (MQ=255)
gggAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGttt > 2:1222901/1‑140 (MQ=255)
gggAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGttt > 2:338719/1‑140 (MQ=255)
gggAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGttt > 1:1429019/1‑140 (MQ=255)
cgcgGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGCCCTCATCAATAATGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGtcat < 1:966213/140‑1 (MQ=255)
cgcgGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGtcat < 1:801124/140‑1 (MQ=255)
gcggcgAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGtcatc > 2:1438966/1‑140 (MQ=255)
cgAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGgt < 1:1379494/140‑1 (MQ=255)
gAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGgtt < 2:927677/140‑1 (MQ=255)
gAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGgtt < 2:1199394/140‑1 (MQ=255)
gAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGgtt < 1:338719/140‑1 (MQ=255)
aaaaTTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGgttt < 1:25666/140‑1 (MQ=255)
tcCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTAc < 1:403538/140‑1 (MQ=255)
tcCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTAc < 1:1375212/140‑1 (MQ=255)
cTTCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTcc < 1:653942/140‑1 (MQ=255)
tCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCAc < 1:816289/140‑1 (MQ=255)
tCAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCAc > 1:72162/1‑140 (MQ=255)
cAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTT‑CAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATAtt < 1:1137460/133‑1 (MQ=255)
cAGAGAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTT‑CAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATAtt > 2:1137460/1‑133 (MQ=255)
agagAATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCAc < 1:487535/138‑1 (MQ=255)
gaATCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAAc < 2:119556/140‑1 (MQ=255)
aTCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACtt > 1:1330950/1‑140 (MQ=255)
aTCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACtt > 1:119764/1‑140 (MQ=255)
aTCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACtt > 2:452652/1‑140 (MQ=255)
aTCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACtt > 2:585038/1‑140 (MQ=255)
aTCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGGTTTCTACCTGATATTTCCACTTAACtt > 1:839371/1‑140 (MQ=255)
tCCTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTc < 2:119764/140‑1 (MQ=255)
ccTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTaa < 1:445618/135‑1 (MQ=255)
ccTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTaa > 2:445618/1‑135 (MQ=255)
ccTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTcc < 1:553213/140‑1 (MQ=255)
ccTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTcc > 2:553213/1‑140 (MQ=255)
ccTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTcc < 1:1142036/140‑1 (MQ=255)
ccTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTcc < 1:585038/140‑1 (MQ=255)
ccTCTGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTcc < 2:845815/140‑1 (MQ=255)
tctGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTccc < 1:262476/139‑1 (MQ=255)
tctGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTccc > 2:262476/1‑139 (MQ=255)
tGTTTTATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTg < 1:1395766/140‑1 (MQ=255)
ttttATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTc > 1:549404/1‑133 (MQ=255)
ttttATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTc < 2:549404/133‑1 (MQ=255)
ttttATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTc < 2:367460/140‑1 (MQ=255)
tttATGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCt < 1:995638/140‑1 (MQ=255)
aTGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTAc < 1:169622/140‑1 (MQ=255)
tGATCGACCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACt > 2:925815/1‑140 (MQ=255)
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GGAACCCCCGTGCCAGGACGATATTCCAGGCAGTTGACCTCATAGTGATATGCCGGATTAGTACACTCTTTCAGCCCCGGGAACGCGGCGAAAATTTTCTCCTTCGCAGCCTTCAGAGAATCCTCTGTTTTATGATCGGCCTCATCAATAAAGGCATAACGCGTTTCCTGTTTGCCATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATC > NC_000913/3116453‑3116727
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
