Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,178,093 T→C intergenic (‑183/‑22) nudF ← / → tolC ADP‑sugar pyrophosphatase/outer membrane channel TolC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,178,0930TC100.0% 329.4 / NA 91intergenic (‑183/‑22)nudF/tolCADP‑sugar pyrophosphatase/outer membrane channel TolC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (41/50);  total (41/50)

ACGTTTGACTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACTGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCAGCAAGCACGCCTTAGTAACCCGG  >  NC_000913/3177957‑3178226
                                                                                                                                        |                                                                                                                                     
aCGTTTGACTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCt                                                                                                                                    <  1:1018313/140‑1 (MQ=255)
aCGTTTGACTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCt                                                                                                                                    <  1:835249/140‑1 (MQ=255)
aCGTTTGACTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCt                                                                                                                                    <  2:422951/140‑1 (MQ=255)
aCGTTTGACTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCt                                                                                                                                    <  2:607399/140‑1 (MQ=255)
 cGTTTGACTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCtt                                                                                                                                   <  1:849236/140‑1 (MQ=255)
     tGACTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTcacc                                                                                                                               <  1:891060/140‑1 (MQ=255)
        cTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            <  2:59738/140‑1 (MQ=255)
           ccGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            >  1:1127081/1‑137 (MQ=255)
           ccGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            <  2:1127081/137‑1 (MQ=255)
           ccGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAgg                                                                                                                         >  2:775860/1‑140 (MQ=255)
            cGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGa                                                                                                                        >  2:1337379/1‑140 (MQ=255)
            cGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGa                                                                                                                        >  1:699071/1‑140 (MQ=255)
             gTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            >  2:1441536/1‑135 (MQ=255)
             gTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            <  1:1441536/135‑1 (MQ=255)
                     aGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            >  2:623373/1‑127 (MQ=255)
                     aGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            <  1:623373/127‑1 (MQ=255)
                     aGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATg                                                                                                               >  1:852699/1‑140 (MQ=255)
                     aGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTCTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATg                                                                                                               >  1:376291/1‑140 (MQ=255)
                      gTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATga                                                                                                              <  1:1337379/140‑1 (MQ=255)
                       tCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            <  2:551626/125‑1 (MQ=255)
                       tCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACcaca                                                                                                                            >  1:551626/1‑125 (MQ=255)
                        cATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCa                                                                                                                   >  1:726785/1‑133 (MQ=255)
                        cATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCa                                                                                                                   <  2:726785/133‑1 (MQ=255)
                         aTGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATgaaga                                                                                                           >  2:596392/1‑140 (MQ=255)
                         aTGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATgaaga                                                                                                           >  2:1223347/1‑140 (MQ=255)
                             gtTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAAtt                                                                                                       <  2:699071/140‑1 (MQ=255)
                              ttAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTg                                                                                                      >  1:1011065/1‑140 (MQ=255)
                              ttAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTg                                                                                                      >  1:812632/1‑140 (MQ=255)
                                 aaTTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTc                                                                                                   >  1:958532/1‑140 (MQ=255)
                                 aaTTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTc                                                                                                   >  1:727785/1‑140 (MQ=255)
                                  aTTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTcc                                                                                                  <  1:285538/140‑1 (MQ=255)
                                     gAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCa                                                                                               <  2:958532/140‑1 (MQ=255)
                                      aGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCAt                                                                                              >  1:765111/1‑140 (MQ=255)
                                      aGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCAt                                                                                              <  2:1412135/140‑1 (MQ=255)
                                      aGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCAt                                                                                              >  1:984955/1‑140 (MQ=255)
                                            aTTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTAt                                                                                        >  1:828847/1‑140 (MQ=255)
                                            aTTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTAt                                                                                        >  2:928907/1‑140 (MQ=255)
                                                aCGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGc                                                                                    <  2:812632/140‑1 (MQ=255)
                                                aCGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGc                                                                                    <  2:1011065/140‑1 (MQ=255)
                                                 cGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGcc                                                                                   <  1:928907/140‑1 (MQ=255)
                                                 cGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGcc                                                                                   <  1:99568/140‑1 (MQ=255)
                                                  gCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCt                                                                                  <  2:984955/140‑1 (MQ=255)
                                                     cTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAg                                                                               <  2:727785/140‑1 (MQ=255)
                                                     cTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAg                                                                               <  2:1048484/140‑1 (MQ=255)
                                                      tATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCa                                                                                               <  1:1297210/123‑1 (MQ=255)
                                                      tATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCa                                                                                               >  2:1297210/1‑123 (MQ=255)
                                                      tATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAg                                                                               >  2:396413/1‑139 (MQ=255)
                                                      tATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAg                                                                               <  1:396413/139‑1 (MQ=255)
                                                       aTGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGcc                                                                             <  2:852699/140‑1 (MQ=255)
                                                       aTGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGcc                                                                             <  2:713387/140‑1 (MQ=255)
                                                        tGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTa                                                                                         <  2:1200732/127‑1 (MQ=255)
                                                        tGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTa                                                                                         >  1:1200732/1‑127 (MQ=255)
                                                        tGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAg                                                                               <  2:916113/137‑1 (MQ=255)
                                                        tGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAg                                                                               >  1:916113/1‑137 (MQ=255)
                                                           cACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTc                                                                         <  1:1223347/140‑1 (MQ=255)
                                                            aCGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGc                                                                                    <  1:819361/128‑1 (MQ=255)
                                                            aCGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGc                                                                                    >  2:819361/1‑128 (MQ=255)
                                                              gTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTgg                                                                      <  2:1244157/140‑1 (MQ=255)
                                                              gTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTgg                                                                      >  1:504017/1‑140 (MQ=255)
                                                               tAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTggg                                                                     >  2:453480/1‑140 (MQ=255)
                                                                aaCGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAg                                                                               <  2:943620/129‑1 (MQ=255)
                                                                aaCGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAg                                                                               >  1:943620/1‑129 (MQ=255)
                                                                  cGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTc                                                                  >  1:804510/1‑140 (MQ=255)
                                                                  cGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTc                                                                  >  1:1261794/1‑140 (MQ=255)
                                                                    ccAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAg                                                                <  1:453480/140‑1 (MQ=255)
                                                                        ccTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCg                                                            <  2:895913/140‑1 (MQ=255)
                                                                          ttttGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGtt                                                          <  2:828847/140‑1 (MQ=255)
                                                                              gCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGc                                                      <  1:775860/140‑1 (MQ=255)
                                                                                           cTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAAcc                                         <  2:765111/140‑1 (MQ=255)
                                                                                              cTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGa                                      >  1:404169/1‑140 (MQ=255)
                                                                                                      cGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCg                                               <  1:857253/123‑1 (MQ=255)
                                                                                                      cGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCg                                               >  2:857253/1‑123 (MQ=255)
                                                                                                      cGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGtt                              >  2:338985/1‑140 (MQ=255)
                                                                                                      cGCAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGtt                              >  2:832769/1‑140 (MQ=255)
                                                                                                        cAATAATTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTa                            >  1:231674/1‑140 (MQ=255)
                                                                                                           taatTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCa                         <  2:804510/140‑1 (MQ=255)
                                                                                                           taatTTTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCa                         >  1:1391789/1‑140 (MQ=255)
                                                                                                             atTCTACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCagc                       <  2:376291/140‑1 (MQ=255)
                                                                                                                ttACAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCagcaag                    <  2:231674/140‑1 (MQ=255)
                                                                                                                  aCAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCagcaagca                  <  1:596392/140‑1 (MQ=255)
                                                                                                                  aCAGTTTGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGAGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCagcaagca                  <  2:1001697/140‑1 (MQ=255)
                                                                                                                       ttGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCAGCAAGCACGCCt             >  2:216809/1‑140 (MQ=255)
                                                                                                                        tGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCagcaag                    <  2:262015/132‑1 (MQ=255)
                                                                                                                        tGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCagcaag                    >  1:262015/1‑132 (MQ=255)
                                                                                                                        tGATCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCAGCAAGCACGCCtt            >  2:823563/1‑140 (MQ=255)
                                                                                                                          aTCGCGCTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCAGCAAGCACGCCTTAg          <  2:404169/140‑1 (MQ=255)
                                                                                                                              cgcTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCC‑GGCCGAGAGCCTGATGCAAGTTTATCagcaag                    <  1:1363524/125‑1 (MQ=255)
                                                                                                                              cgcTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCC‑GGCCGAGAACCTGATGCAAGTTTATCagcaag                    >  2:1363524/1‑125 (MQ=255)
                                                                                                                              cgcTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTCGAGCCAGGCCGAGAACCTGATGCAAGTTTATCagcaag                    <  1:921994/126‑1 (MQ=255)
                                                                                                                              cgcTAAATACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCAGGGTTCAGTTCGTCGAGCCAGGCCGAGAACCTGATGCAAGTTTATCagcaag                    >  2:921994/1‑126 (MQ=255)
                                                                                                                                  aaaTACCGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCAGCAAGCACGCCTTAGTAACCCgg  <  1:178856/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
ACGTTTGACTGCCGTTTGAGCAGTCATGTGTTAAATTGAGGCACATTAACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACTGCTTCACCACAAGGAATGCAAATGAAGAAATTGCTCCCCATTCTTATCGGCCTGAGCCTTTCTGGGTTCAGTTCGTTGAGCCAGGCCGAGAACCTGATGCAAGTTTATCAGCAAGCACGCCTTAGTAACCCGG  >  NC_000913/3177957‑3178226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A