Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,307,431 T→C T144A (ACT→GCT)  deaD ← ATP‑dependent RNA helicase DeaD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,307,4310TC100.0% 294.7 / NA 82T144A (ACT→GCT) deaDATP‑dependent RNA helicase DeaD
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/43);  total (39/43)

GGTTGCAGAGAACAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGTGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCATGTGTTT  >  NC_000913/3307294‑3307566
                                                                                                                                         |                                                                                                                                       
ggTTGCAGAGAACAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAgcgc                                                                                                                                       <  2:1344087/140‑1 (MQ=255)
      agagAACAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGtt                                                                                                                                 <  1:1057874/140‑1 (MQ=255)
      agagAACAGAGCGGTCTAATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGtt                                                                                                                                 <  2:71275/140‑1 (MQ=255)
           aCAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAgg                                                                                                                            <  2:1427596/140‑1 (MQ=255)
           aCAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAgg                                                                                                                            <  1:3940/140‑1 (MQ=255)
           aCAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAgg                                                                                                                            <  2:213566/140‑1 (MQ=255)
           aCAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAgg                                                                                                                            <  1:1183072/140‑1 (MQ=255)
            cAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAggt                                                                                                                           >  2:581669/1‑140 (MQ=255)
               agCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAggtggt                                                                                                                        >  2:295472/1‑140 (MQ=255)
               agCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAggtggt                                                                                                                        >  1:1408065/1‑140 (MQ=255)
               agCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAggtggt                                                                                                                        >  1:582126/1‑140 (MQ=255)
               agCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAggtggt                                                                                                                        >  2:585511/1‑140 (MQ=255)
               agCGGTCTGATGACCTCCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAggtggt                                                                                                                        >  1:1349778/1‑140 (MQ=255)
                    tCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCcagc                                                                                                                   >  2:1278180/1‑140 (MQ=255)
                    tCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCcagc                                                                                                                   >  2:1081791/1‑140 (MQ=255)
                       gatgaCCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGa                                                                                                                <  2:1440087/140‑1 (MQ=255)
                       gatgaCCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGa                                                                                                                <  2:996913/140‑1 (MQ=255)
                       gatgaCCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGa                                                                                                                <  2:1182131/140‑1 (MQ=255)
                       gatgaCCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGa                                                                                                                <  1:295472/140‑1 (MQ=255)
                              ttCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCg                                                                                                         >  2:292434/1‑140 (MQ=255)
                              ttCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCg                                                                                                         <  1:640895/140‑1 (MQ=255)
                                ccGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGa                                                                                                       >  1:1189295/1‑140 (MQ=255)
                                ccGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGa                                                                                                       >  1:1297636/1‑140 (MQ=255)
                                      tCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCg                                                                                                 <  1:585511/140‑1 (MQ=255)
                                       cTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGa                                                                                                >  2:795184/1‑140 (MQ=255)
                                        tGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGAc                                                                                               >  1:1470169/1‑140 (MQ=255)
                                         gcgcCATAATGGTTTCAACGTCTTCGATGAAGCCAATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCATAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACa                                                                                              >  2:957446/1‑140 (MQ=255)
                                               tAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATc                                                                                        >  2:1134563/1‑140 (MQ=255)
                                               tAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATc                                                                                        >  1:1049964/1‑140 (MQ=255)
                                                   ggTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCg                                                                                    <  2:1410669/140‑1 (MQ=255)
                                                       tCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGccc                                                                                <  2:1470169/140‑1 (MQ=255)
                                                       tCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGccc                                                                                <  2:303388/140‑1 (MQ=255)
                                                       tCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGccc                                                                                <  1:575337/140‑1 (MQ=255)
                                                         aaCGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCt                                                                              >  2:1000513/1‑140 (MQ=255)
                                                          aCGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTg                                                                             >  2:866712/1‑140 (MQ=255)
                                                            gTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGAc                                                                           <  1:1081791/140‑1 (MQ=255)
                                                              cTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGc                                                                         >  1:417678/1‑140 (MQ=255)
                                                                   aTGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGgc                                                                    <  2:1297636/140‑1 (MQ=255)
                                                                            aTGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTg                                                           <  2:402418/140‑1 (MQ=255)
                                                                             tGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCATTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGc                                                          >  2:269108/1‑140 (MQ=255)
                                                                              gcgcAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCa                                                         >  1:36610/1‑140 (MQ=255)
                                                                              gcgcAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCa                                                         <  1:1000513/140‑1 (MQ=255)
                                                                                 cagcaTTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGt                                                      >  1:202871/1‑140 (MQ=255)
                                                                                  agcaTTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTc                                                     <  1:795184/140‑1 (MQ=255)
                                                                                   gcaTTTCGTCAGCTTCATCCAGAACCAGACCGCTCATTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCa                                                    <  1:269108/140‑1 (MQ=255)
                                                                                   gcaTTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCa                                                    <  2:582126/140‑1 (MQ=255)
                                                                                    caTTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCAt                                                   >  1:1235754/1‑140 (MQ=255)
                                                                                        tCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACg                                               >  2:32920/1‑140 (MQ=255)
                                                                                          gTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCATAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCt                                             <  1:957446/140‑1 (MQ=255)
                                                                                          gTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCt                                             <  2:1189295/140‑1 (MQ=255)
                                                                                              gCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTC‑GGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGgcc                                         <  1:562568/139‑1 (MQ=255)
                                                                                              gCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTC‑GGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGgcc                                         >  2:562568/1‑139 (MQ=255)
                                                                                               cTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGgccg                                        >  2:835748/1‑140 (MQ=255)
                                                                                               cTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGgccg                                        <  1:32920/140‑1 (MQ=255)
                                                                                                  cATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGccgccg                                     <  2:1349778/140‑1 (MQ=255)
                                                                                                   aTCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGt                                    <  1:1278180/140‑1 (MQ=255)
                                                                                                   aTCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGt                                    <  2:1049964/140‑1 (MQ=255)
                                                                                                   aTCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGt                                    <  1:1134563/140‑1 (MQ=255)
                                                                                                         aaCCAGACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACagag                              >  1:1475226/1‑140 (MQ=255)
                                                                                                              gACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAAcc                         >  1:1283657/1‑140 (MQ=255)
                                                                                                              gACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAAcc                         >  1:98066/1‑140 (MQ=255)
                                                                                                              gACCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAAcc                         >  2:135757/1‑140 (MQ=255)
                                                                                                               aCCGCTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACca                        >  2:78423/1‑140 (MQ=255)
                                                                                                                   cTCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACAtt                    >  2:1287492/1‑140 (MQ=255)
                                                                                                                    tCAGTTTAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACAttt                   >  2:560780/1‑140 (MQ=255)
                                                                                                                          tAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTAcgccg             <  2:87887/140‑1 (MQ=255)
                                                                                                                          tAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTAcgccg             <  2:417678/140‑1 (MQ=255)
                                                                                                                          tAGAGAGGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTAcgccg             <  1:78423/140‑1 (MQ=255)
                                                                                                                            gagagGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCcgcg           <  2:613224/140‑1 (MQ=255)
                                                                                                                              gagGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCa         <  2:1283657/140‑1 (MQ=255)
                                                                                                                               agGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGTAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAt        <  2:1408065/140‑1 (MQ=255)
                                                                                                                               agGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAt        <  1:581669/140‑1 (MQ=255)
                                                                                                                               agGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAt        <  2:98066/140‑1 (MQ=255)
                                                                                                                               agGTCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAt        <  1:560780/140‑1 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTAcgccg             <  1:1371326/132‑1 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTAcgccg             >  2:1371326/1‑132 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCcgcg           >  1:1461688/1‑134 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCcgcg           <  2:1461688/134‑1 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAtgtg     >  1:764166/1‑140 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAtgtg     >  2:526412/1‑140 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAtgtg     >  2:919359/1‑140 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAtgtg     >  2:275967/1‑140 (MQ=255)
                                                                                                                                  tCCAGAGCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCAtgtg     >  2:1385659/1‑140 (MQ=255)
                                                                                                                                     agagCGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCTTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCATGTGttt  <  2:599685/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GGTTGCAGAGAACAGAGCGGTCTGATGACCTTCCGGGATCTGCGCCATAATGGTTTCAACGTCTTCGATGAAGCCCATGCGCAGCATTTCGTCAGCTTCATCCAGAACCAGACCGCTCAGTTTAGAGAGGTCCAGAGTGCCACGTTTCAGGTGGTCCAGCAGACGGCCCGGAGTACCGACAACGATCTGCGGCCCCTGACGCAGGGCGCGTAATTGCACGTCATAACGCTGGCCGCCGTACAGAGCAACCACATTTACGCCGCGCATGTGTTT  >  NC_000913/3307294‑3307566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A