Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,034,244 A→G N367S (AAC→AGC)  trkH → K(+) transporter TrkH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,034,2440AG100.0% 245.2 / NA 69N367S (AAC→AGC) trkHK(+) transporter TrkH
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (24/45);  total (24/45)

GCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATG  >  NC_000913/4034118‑4034380
                                                                                                                               |                                                                                                                                        
gCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGaaa                                                                                                                             <  1:1071979/140‑1 (MQ=255)
  aTTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACg                                                                                                                           <  1:340405/140‑1 (MQ=255)
         gCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTg                                                                                                                    <  1:792839/140‑1 (MQ=255)
                gCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGa                                                                                                             <  1:928994/140‑1 (MQ=255)
                gCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGa                                                                                                             <  1:627314/140‑1 (MQ=255)
                   ctTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACg                                                                                                          <  1:1083625/140‑1 (MQ=255)
                   ctTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACg                                                                                                          <  2:783897/140‑1 (MQ=255)
                   ctTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACg                                                                                                          <  2:300831/140‑1 (MQ=255)
                   ctTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACg                                                                                                          <  2:464341/140‑1 (MQ=255)
                   ctTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACg                                                                                                          <  2:486845/140‑1 (MQ=255)
                     ttttGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGcc                                                                                                        <  1:47640/140‑1 (MQ=255)
                     ttttGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGcc                                                                                                        <  1:1371245/140‑1 (MQ=255)
                          ccGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGTGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCta                                                                                                   <  1:1237589/140‑1 (MQ=255)
                               aCTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCa                                                                                              <  2:1421261/140‑1 (MQ=255)
                                 tGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCAtt                                                                                            <  2:959123/140‑1 (MQ=255)
                                  gCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTa                                                                                           <  2:1177047/140‑1 (MQ=255)
                                     tttATGTTCAGCCTTTATCGGCGGGTTCGCCGGGGCGAAAGGGGGGGGGCC‑GGAGGGGGTCCGCCCCCTGCTGCTGTTTTAGCAGGGGGGGCGGGGGCGGGAACGACATGGGCATCCGCACGCCGGCTATAGGAtttaat                                                                                        >  2:254884/1‑136 (MQ=255)
                                       tATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTg                                                                                      <  1:1251214/140‑1 (MQ=255)
                                                 cTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATcgcg                                                                            <  2:82076/140‑1 (MQ=255)
                                                 cTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATcgcg                                                                            <  1:1176630/140‑1 (MQ=255)
                                                 cTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATcgcg                                                                            <  1:761375/140‑1 (MQ=255)
                                                 cTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATcgcg                                                                            <  2:294856/140‑1 (MQ=255)
                                                    tATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCAc                                                                         <  1:254884/140‑1 (MQ=255)
                                                            gTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGaa                                                                 <  2:6633/140‑1 (MQ=255)
                                                             ttGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAAc                                                                <  1:434130/140‑1 (MQ=255)
                                                                    gggTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCt                                                         <  1:60600/140‑1 (MQ=255)
                                                                     ggTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGTTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTc                                                        >  1:1300608/1‑140 (MQ=255)
                                                                          aaCGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAg                                                    <  1:184603/140‑1 (MQ=255)
                                                                           aCGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGaa                                                     <  2:1365691/138‑1 (MQ=255)
                                                                           aCGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGaa                                                     >  1:1365691/1‑138 (MQ=255)
                                                                                    ggCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTgggg                                          >  2:1439372/1‑140 (MQ=255)
                                                                                        tGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGAttt                                      >  1:1190428/1‑140 (MQ=255)
                                                                                          aaGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGAttttt                                    >  2:1474418/1‑140 (MQ=255)
                                                                                            ggTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTtct                                  <  1:1434776/140‑1 (MQ=255)
                                                                                             gTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTtctc                                 <  1:92470/140‑1 (MQ=255)
                                                                                             gTGATCCGCATCCTGCTGCTGTCTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTtctc                                 <  1:1052780/140‑1 (MQ=255)
                                                                                               gATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCg                               >  2:1145604/1‑140 (MQ=255)
                                                                                               gATCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCg                               >  2:1312442/1‑140 (MQ=255)
                                                                                                acccGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGc                              >  1:488432/3‑140 (MQ=255)
                                                                                                aTCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGc                              >  2:392086/1‑140 (MQ=255)
                                                                                                aTCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGc                              >  1:938418/1‑140 (MQ=255)
                                                                                                aTCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGc                              >  1:96974/1‑140 (MQ=255)
                                                                                                aTCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGc                              >  1:946411/1‑140 (MQ=255)
                                                                                                aTCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGc                              >  1:646285/1‑140 (MQ=255)
                                                                                                aTCCGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGc                              >  1:439530/1‑140 (MQ=255)
                                                                                                   cGCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTa                           <  2:674610/140‑1 (MQ=255)
                                                                                                    gCATCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTAt                          >  2:431424/1‑140 (MQ=255)
                                                                                                       tCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCa                       <  2:938418/140‑1 (MQ=255)
                                                                                                       tCCTGCTGCTGTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCa                       <  2:646285/140‑1 (MQ=255)
                                                                                                          tgctgctgTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTg                    >  2:231584/1‑140 (MQ=255)
                                                                                                           gctgctgTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTgg                   <  1:789829/140‑1 (MQ=255)
                                                                                                            ctgctgTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCAtt                     <  1:1145797/137‑1 (MQ=255)
                                                                                                            ctgctgTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCAtt                     >  2:1145797/1‑137 (MQ=255)
                                                                                                            ctgctgTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTg                    <  2:1234455/138‑1 (MQ=255)
                                                                                                            ctgctgTTTAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTg                    >  1:1234455/1‑138 (MQ=255)
                                                                                                                  tttAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAt            <  1:670982/140‑1 (MQ=255)
                                                                                                                  tttAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAt            >  2:179741/1‑140 (MQ=255)
                                                                                                                  tttAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAt            <  1:1145604/140‑1 (MQ=255)
                                                                                                                  tttAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAt            <  2:824321/140‑1 (MQ=255)
                                                                                                                   ttAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAtt           >  1:346645/1‑140 (MQ=255)
                                                                                                                   ttAAGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAtt           <  1:1063918/140‑1 (MQ=255)
                                                                                                                     aaGCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGt         <  2:1262592/140‑1 (MQ=255)
                                                                                                                       gCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCa                       >  1:81217/1‑124 (MQ=255)
                                                                                                                       gCAGGGGAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCa                       <  2:81217/124‑1 (MQ=255)
                                                                                                                            ggAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAtt           <  1:737427/131‑1 (MQ=255)
                                                                                                                            ggAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAtt           >  2:737427/1‑131 (MQ=255)
                                                                                                                            ggAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAt            <  2:572764/130‑1 (MQ=255)
                                                                                                                            ggAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTAt            <  2:1163351/130‑1 (MQ=255)
                                                                                                                            ggAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATg  >  1:1384490/1‑140 (MQ=255)
                                                                                                                            ggAGCCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATg  >  2:871005/1‑140 (MQ=255)
                                                                                                                               |                                                                                                                                        
GCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTC‑AACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATG  >  NC_000913/4034118‑4034380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A