Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
183 |
98.6 |
3427438 |
96.9% |
3321187 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,432,087 |
C→T |
G1013G (GGC→GGT) |
stfR → |
Rac prophage; putative membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,432,087 | 0 | C | T | 99.3%
| 492.2
/ NA
| 138 | G1013G (GGC→GGT) | stfR | Rac prophage; putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (67/70); total (68/70) |
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 140 total aligned reads displayed.
CAGGACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATCTGCTGGCG > NC_000913/1431953‑1432223
|
cAGGACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTAc > 2:1699382/1‑140 (MQ=255)
aGGGCGGCATTACATCGCAAACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACa > 2:1578969/1‑140 (MQ=255)
aGGACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACa > 1:442328/1‑140 (MQ=255)
aGGACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACa > 2:133624/1‑140 (MQ=255)
aGGACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACa > 2:168222/1‑140 (MQ=255)
gACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACaaa > 1:213213/1‑140 (MQ=255)
cATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCgg > 2:1464338/1‑140 (MQ=255)
cATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCgg < 2:213213/140‑1 (MQ=255)
aTTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGc < 2:651477/140‑1 (MQ=255)
ttAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCt < 1:133624/140‑1 (MQ=255)
tAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTg < 1:1519180/140‑1 (MQ=255)
aaTCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGa > 2:491100/1‑140 (MQ=255)
aaTCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGa > 2:216018/1‑140 (MQ=255)
aTCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAg < 2:1116235/140‑1 (MQ=255)
cATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGcaca > 2:572816/1‑140 (MQ=255)
cATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGcaca < 1:1394635/140‑1 (MQ=255)
ccACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGcacacacac < 1:1519401/140‑1 (MQ=255)
ccACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGcacacacac < 1:1659507/140‑1 (MQ=255)
cacaGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGcacacacaca < 2:1629825/140‑1 (MQ=255)
agcgccagcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACAcactc > 1:1447594/1‑140 (MQ=255)
cgccagcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACAcactcac > 1:267686/1‑140 (MQ=255)
cgccagcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACAcactcac > 2:1389467/1‑140 (MQ=255)
ccagcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTa < 1:815726/140‑1 (MQ=255)
cagcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAg < 2:1179261/140‑1 (MQ=255)
cagcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAg > 1:833180/1‑140 (MQ=255)
cagcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAg > 1:929782/1‑140 (MQ=255)
agcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGcacacacac < 1:913008/130‑1 (MQ=255)
agcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGc > 2:342151/1‑140 (MQ=255)
agcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGc > 1:277802/1‑140 (MQ=255)
agcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGc > 2:1521754/1‑140 (MQ=255)
agcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGc > 2:1393695/1‑140 (MQ=255)
gcgcATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGcc < 1:66838/140‑1 (MQ=255)
aGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGaa < 1:619445/140‑1 (MQ=255)
gTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAac < 2:929782/140‑1 (MQ=255)
tACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAaca > 2:477660/1‑140 (MQ=255)
aTTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCt > 2:1668370/1‑140 (MQ=255)
aTTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCt > 2:6868/1‑140 (MQ=255)
tttGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGc > 1:45138/1‑138 (MQ=255)
ttGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAg > 1:53593/1‑140 (MQ=255)
tGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGt > 1:1204331/1‑140 (MQ=255)
ggggACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTg > 2:1081710/1‑140 (MQ=255)
gggACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGc > 1:115216/1‑134 (MQ=255)
gggACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGc < 2:115216/134‑1 (MQ=255)
gggACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGc > 2:1103477/1‑140 (MQ=255)
gggACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGc > 2:377426/1‑140 (MQ=255)
gggACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGc < 1:629656/140‑1 (MQ=255)
gggACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACC‑GGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCt > 2:128961/1‑140 (MQ=255)
ggACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCt < 1:1464338/140‑1 (MQ=255)
aCGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTaa > 2:1548223/1‑140 (MQ=255)
aCGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAG‑‑CACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACt < 1:491100/140‑1 (MQ=255)
gAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACt < 2:940415/140‑1 (MQ=255)
gAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACt > 1:1535624/1‑140 (MQ=255)
gAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGAAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACt < 1:545669/140‑1 (MQ=255)
aaaCCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTcc < 1:377426/140‑1 (MQ=255)
aaCCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCg < 1:342151/140‑1 (MQ=255)
acaTCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGc < 2:1204331/140‑1 (MQ=255)
acaTCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGc < 1:1676835/140‑1 (MQ=255)
tcgtTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAg > 2:848053/1‑140 (MQ=255)
tttGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGc > 1:564328/1‑140 (MQ=255)
tGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCAt > 2:1126020/1‑140 (MQ=255)
tGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCAt < 1:1081710/140‑1 (MQ=255)
aTTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATca > 2:102452/1‑140 (MQ=255)
ttACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATcaa < 1:1393695/140‑1 (MQ=255)
aCGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATcaaca < 2:267686/140‑1 (MQ=255)
aCGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATcaaca < 1:6868/140‑1 (MQ=255)
ggCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAg < 1:1630558/140‑1 (MQ=255)
cACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGAt > 2:124786/1‑140 (MQ=255)
tAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGt < 1:102452/140‑1 (MQ=255)
tAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGt > 1:1345837/1‑140 (MQ=255)
aTCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCtg < 1:1668370/140‑1 (MQ=255)
aTCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCtg < 2:699651/140‑1 (MQ=255)
tCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCtgt < 1:1521754/140‑1 (MQ=255)
gAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGc > 2:1700355/1‑140 (MQ=255)
gAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGc > 1:909971/1‑140 (MQ=255)
gAATAACACCGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGc < 1:1389467/140‑1 (MQ=255)
ccGGGGCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCaa < 1:124786/140‑1 (MQ=255)
cGGGGCACATACAAACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCaaa > 2:897155/1‑140 (MQ=255)
gggCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAAc > 1:1132508/1‑140 (MQ=255)
ggCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACt > 1:371491/1‑140 (MQ=255)
ggCACATACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACt < 2:53593/140‑1 (MQ=255)
cacaTACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTAt < 1:1103477/140‑1 (MQ=255)
acaTACACACAGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATg < 2:376023/140‑1 (MQ=255)
cacaGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAAcatc > 2:647834/1‑140 (MQ=255)
acaGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAAcatca > 2:573636/1‑140 (MQ=255)
aGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACatcatc > 1:666638/1‑140 (MQ=255)
aGTGTGAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACatcatc < 2:1535624/140‑1 (MQ=255)
tgtgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATg > 1:180116/1‑128 (MQ=255)
tgtgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATg < 2:180116/128‑1 (MQ=255)
tgtgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGc > 1:1271146/1‑129 (MQ=255)
tgtgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGc < 2:1271146/129‑1 (MQ=255)
tgtgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctg > 2:356471/1‑140 (MQ=255)
tgtgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctg > 2:1234532/1‑140 (MQ=255)
tgtgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctg > 2:902957/1‑140 (MQ=255)
tgtgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctg > 1:490019/1‑140 (MQ=255)
tgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCGACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctgct > 1:222744/1‑140 (MQ=255)
tgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctgct > 2:888157/1‑140 (MQ=255)
tgAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctgct < 2:1447594/140‑1 (MQ=255)
gAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctgctg < 2:666638/140‑1 (MQ=255)
gAGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATctgctg < 2:426668/140‑1 (MQ=255)
aGCGGTTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATCTGCTgg > 2:795067/1‑140 (MQ=255)
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CAGGACGGCATTAAATCGCATACCCACAGCGCCAGCGCATCCAGTACAGATTTGGGGACGAAAACCACATCGTCGTTTGATTACGGCACTAAATCCACGAATAACACCGGGGCACATACACACAGTGTGAGCGGCTCTACAAACTCGGCTGGAGCACACACACACTCACTAGCCAACGTGAACACGGCTAGTGCTAACTCCGGTGCTGGTAGTGCATCAACAAGATTGTCTGTTGTGCATAATCAAAACTATGCAACATCATCTGCTGGCG > NC_000913/1431953‑1432223
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
