Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,834,524	Δ1 bp	coding (409/678 nt)	ydjY →	4Fe‑4S ferredoxin‑type domain‑containing protein YdjY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,834,521	0	G	.	100.0%	442.4 / NA	102	coding (406/678 nt)	ydjY	4Fe‑4S ferredoxin‑type domain‑containing protein YdjY
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (50/52); total (50/52)

Only 100 of 103 total aligned reads displayed.

TATGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCTGGATAGC  >  NC_000913/1834389‑1834652

tATGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTTGATATTTCGGTCAACTGGCAA‑GGGCGGCa                                                                                                                             <  1:772240/140‑1 (MQ=255)

tATGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCa                                                                                                                             <  2:1135267/140‑1 (MQ=255)

tATGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCa                                                                                                                             <  2:1391633/140‑1 (MQ=255)

 aTGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCaa                                                                                                                            >  1:581014/1‑140 (MQ=255)

 aTGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCaa                                                                                                                            >  2:1551471/1‑140 (MQ=255)

 aTGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCaa                                                                                                                            >  1:1366096/1‑140 (MQ=255)

 aTGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCaa                                                                                                                            >  1:1232666/1‑140 (MQ=255)

  tGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCaaa                                                                                                                           >  1:1054686/1‑140 (MQ=255)

   gCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGTATATTTCGGTCAACTGGCAA‑GGGCGGCaaaa                                                                                                                          <  1:939268/140‑1 (MQ=255)

   gCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCaaaa                                                                                                                          <  2:1618767/140‑1 (MQ=255)

      aCCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCg                                                                                                                       <  2:1636520/140‑1 (MQ=255)

        cccGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTa                                                                                                                     <  2:581014/140‑1 (MQ=255)

            aaaGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTcc                                                                                                                 >  1:822315/1‑140 (MQ=255)

             aaGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCt                                                                                                                <  1:777924/140‑1 (MQ=255)

             aaGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCt                                                                                                                <  2:1693462/140‑1 (MQ=255)

               gCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTc                                                                                                              <  1:1286138/140‑1 (MQ=255)

                cATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCg                                                                                                             <  1:1683349/140‑1 (MQ=255)

                 aTTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGa                                                                                                            <  2:623886/140‑1 (MQ=255)

                   tttATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATg                                                                                                          <  2:1232666/140‑1 (MQ=255)

                   tttATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATg                                                                                                          >  1:1543161/1‑140 (MQ=255)

                      aTGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAg                                                                                                       <  2:824597/140‑1 (MQ=255)

                         aaGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGa                                                                                                    <  1:1694196/140‑1 (MQ=255)

                            cccTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGTAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttg                                                                                                 >  2:1057373/1‑140 (MQ=255)

                              cTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttgtt                                                                                               <  2:174333/140‑1 (MQ=255)

                              cTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttgtt                                                                                               <  1:1551471/140‑1 (MQ=255)

                              cTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttgtt                                                                                               <  2:1543161/140‑1 (MQ=255)

                              cTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGAttgtt                                                                                               <  2:815789/140‑1 (MQ=255)

                                gAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGa                                                                                             <  1:1607810/140‑1 (MQ=255)

                                gAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCAGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGa                                                                                             <  2:1184939/140‑1 (MQ=255)

                                 aaaGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGAc                                                                                            >  1:1184591/1‑140 (MQ=255)

                                    gagGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGt                                                                                         <  2:1366096/140‑1 (MQ=255)

                                    gagGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGt                                                                                         <  2:822315/140‑1 (MQ=255)

                                    gagGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGt                                                                                         <  1:442582/140‑1 (MQ=255)

                                      ggCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTaa                                                                                       >  2:396065/1‑140 (MQ=255)

                                      ggCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTaa                                                                                       >  2:1602520/1‑140 (MQ=255)

                                           gtggtACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCa                                                                                  >  1:214721/1‑140 (MQ=255)

                                           gtggtACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCa                                                                                  >  1:638931/1‑140 (MQ=255)

                                           gtggtACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCa                                                                                  >  1:111895/1‑140 (MQ=255)

                                              gtACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGa                                                                               <  1:195811/140‑1 (MQ=255)

                                                 cGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAAc                                                                            <  2:1685211/140‑1 (MQ=255)

                                                   ccGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTg                                                                          >  2:1049228/1‑140 (MQ=255)

                                                    cGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTgg                                                                         >  1:884824/1‑140 (MQ=255)

                                                     gggCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGa                                                                        >  1:670466/1‑140 (MQ=255)

                                                     gggCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGa                                                                        >  1:215228/1‑140 (MQ=255)

                                                             aCATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCt                                                                <  1:516548/140‑1 (MQ=255)

                                                                 gACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTgg                                                            >  1:901900/1‑140 (MQ=255)

                                                                               aaGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACgg                                              <  1:1384364/140‑1 (MQ=255)

                                                                                aGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgc                                             >  2:49686/1‑140 (MQ=255)

                                                                                  aaaCGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGt                                                        <  2:8278/127‑1 (MQ=255)

                                                                                  aaaCGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGt                                                        >  1:8278/1‑127 (MQ=255)

                                                                                  aaaCGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcag                                           >  2:943670/1‑140 (MQ=255)

                                                                                  aaaCGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcag                                           >  1:851776/1‑140 (MQ=255)

                                                                                  aaaCGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcag                                           >  1:1207984/1‑140 (MQ=255)

                                                                                   aaCGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcagc                                          >  1:1212725/1‑140 (MQ=255)

                                                                                   aaCGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGgcagc                                          >  1:731962/1‑140 (MQ=255)

                                                                                       aCTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaa                                      >  2:1484221/1‑140 (MQ=255)

                                                                                       aCTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaa                                      >  2:1341558/1‑140 (MQ=255)

                                                                                       aCTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaa                                      >  2:1301884/1‑140 (MQ=255)

                                                                                       aCTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaa                                      >  1:1467860/1‑140 (MQ=255)

                                                                                       aCTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaa                                      >  2:929998/1‑140 (MQ=255)

                                                                                        cTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaag                                     >  1:483913/1‑140 (MQ=255)

                                                                                        cTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaag                                     >  1:357905/1‑140 (MQ=255)

                                                                                           aTGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaagaga                                  >  1:218620/1‑140 (MQ=255)

                                                                                            tGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCagaagagaa                                 >  1:900875/1‑140 (MQ=255)

                                                                                               cacaGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAgaagaa                              <  1:1341558/140‑1 (MQ=255)

                                                                                                acaGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGaaa                             <  2:1054686/140‑1 (MQ=255)

                                                                                                acaGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGaaa                             >  1:606167/1‑140 (MQ=255)

                                                                                                  aGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAAc                           >  1:283307/1‑140 (MQ=255)

                                                                                                  aGGCAGCAAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAAc                           >  1:174070/1‑140 (MQ=255)

                                                                                                    gcagcaAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACgg                         <  2:483913/140‑1 (MQ=255)

                                                                                                    gcagcaAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACgg                         <  1:91971/140‑1 (MQ=255)

                                                                                                     cagcaAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACggg                        >  1:331182/1‑140 (MQ=255)

                                                                                                      agcaAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGt                       >  1:67496/1‑140 (MQ=255)

                                                                                                        caAACTGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTg                     >  1:1705470/1‑140 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGTAGAAGAGAAGAAAACGGGTTGCCTgg                <  2:638931/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTg                     <  1:359079/135‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTg                     >  2:359079/1‑135 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  1:1301884/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  1:943670/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  1:1602520/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  2:564319/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  1:981969/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  2:214721/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  2:1705470/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  1:1057373/140‑1 (MQ=255)

                                                                                                             tGGATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTgg                <  1:396065/140‑1 (MQ=255)

                                                                                                               gATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACgg                         >  2:293023/1‑129 (MQ=255)

                                                                                                               gATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACgg                         <  1:293023/129‑1 (MQ=255)

                                                                                                               gATATTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGgtg              <  2:67496/140‑1 (MQ=255)

                                                                                                                atatTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGgtgt             <  2:901900/140‑1 (MQ=255)

                                                                                                                atatTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGgtgt             <  2:215228/140‑1 (MQ=255)

                                                                                                                  atTTCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGgtgtgt           >  1:332383/1‑140 (MQ=255)

                                                                                                                    ttCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCt         <  1:1484221/140‑1 (MQ=255)

                                                                                                                    ttCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCt         >  2:439077/1‑140 (MQ=255)

                                                                                                                    ttCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCt         >  1:816359/1‑140 (MQ=255)

                                                                                                                     tCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGgt               >  1:1289719/1‑133 (MQ=255)

                                                                                                                     tCGGTCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGgt               <  2:1289719/133‑1 (MQ=255)

                                                                                                                         tCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCTGGATa    <  2:670466/140‑1 (MQ=255)

                                                                                                                         tCAACTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCTGGATa    >  1:404014/1‑140 (MQ=255)

                                                                                                                           aaCTGGCAA‑GGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCTGGATAGc  >  2:324193/1‑140 (MQ=255)

TATGCGACCCCGAAAGCATTTTATGAAGCCCTGAAAGAGGCAGGTGGTACGCCGGGCGAAAACATGACGATGGATAATAAAGAAACGACTCATGTCACAGGCAGCAAACTGGATATTTCGGTCAACTGGCAAGGGGCGGCAAAAGCGTATTCCTTCGATGAAGTGATTGTTGACAGTAATGGCAAGAAACTGGACATGCGCTTTGGCGGTAATTTAACGGCAGCAGAAGAGAAGAAAACGGGTTGCCTGGTGTGTCTGGATAGC  >  NC_000913/1834389‑1834652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A