Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,038,915	T→C	intergenic (‑92/‑41)	hprR ← / → yedX	DNA‑binding transcriptional dual regulator HprR/hydroxyisourate hydrolase/transthyretin‑related protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,038,915	0	T	C	98.9%	339.9 / ‑5.3	92	intergenic (‑92/‑41)	hprR/yedX	DNA‑binding transcriptional dual regulator HprR/hydroxyisourate hydrolase/transthyretin‑related protein
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (45/46); total (45/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCA  >  NC_000913/2038780‑2039050

cATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCt                                                                                                                                     <  1:87613/140‑1 (MQ=255)

cATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCt                                                                                                                                     <  1:796393/140‑1 (MQ=255)

   tCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAACTCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATc                                                                                                                                  >  2:1182023/1‑140 (MQ=255)

     cTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCt                                                                                                                                <  1:1382079/140‑1 (MQ=255)

        ggTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCt                                                                                                                                     <  1:1504043/132‑1 (MQ=255)

        ggTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCaa                                                                                                                             >  1:643075/1‑140 (MQ=255)

        ggTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCaa                                                                                                                             >  1:405327/1‑140 (MQ=255)

        ggTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTAGAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCt                                                                                                                                     >  2:1504043/1‑132 (MQ=255)

             tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTc                                                                                                                        >  2:103534/1‑140 (MQ=255)

             tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTc                                                                                                                        >  1:1473880/1‑140 (MQ=255)

             tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTc                                                                                                                        >  1:1335745/1‑140 (MQ=255)

                gATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCAtt                                                                                                                     <  2:1433973/140‑1 (MQ=255)

                   tATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAACCAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGCCGCTTTTCCGATATCCTCAAAACTCATTcac                                                                                                                  <  2:1453469/140‑1 (MQ=255)

                   tATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTcac                                                                                                                  >  1:1519928/1‑140 (MQ=255)

                    aTCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTcaca                                                                                                                 <  1:1589061/140‑1 (MQ=255)

                        tCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGAc                                                                                                             <  2:552858/140‑1 (MQ=255)

                        tCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGAc                                                                                                             <  2:1120752/140‑1 (MQ=255)

                         cAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACa                                                                                                            <  2:529035/140‑1 (MQ=255)

                         cAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACa                                                                                                            <  2:1590369/140‑1 (MQ=255)

                         cAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACa                                                                                                            <  1:103534/140‑1 (MQ=255)

                          aaTAAGTAAAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACaa                                                                                                           >  1:89531/1‑140 (MQ=255)

                           aTAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAg                                                                                                          >  2:915127/1‑140 (MQ=255)

                               gTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTACTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGata                                                                                                      >  1:1356725/1‑140 (MQ=255)

                                tAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGatat                                                                                                     >  2:79543/1‑140 (MQ=255)

                                tAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGatat                                                                                                     <  2:1473880/140‑1 (MQ=255)

                                   aaTCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATaaa                                                                                                  >  1:1663794/1‑140 (MQ=255)

                                   aaTCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATaaa                                                                                                  >  2:810182/1‑140 (MQ=255)

                                   aaTCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATaaa                                                                                                  <  1:915127/140‑1 (MQ=255)

                                   aaTCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATaaa                                                                                                  >  2:1493038/1‑140 (MQ=255)

                                         cATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGtt                                                                                            >  1:738887/1‑140 (MQ=255)

                                          aTGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTa                                                                                           <  2:55599/140‑1 (MQ=255)

                                             aaaaTAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAg                                                                                        <  1:743133/140‑1 (MQ=255)

                                               aataatATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCg                                                                                      <  1:1493038/140‑1 (MQ=255)

                                               aataatATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCg                                                                                      <  2:1090098/140‑1 (MQ=255)

                                               aataatATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCg                                                                                      <  1:79543/140‑1 (MQ=255)

                                               aataatATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCg                                                                                      <  2:738887/140‑1 (MQ=255)

                                                 taataTGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCg                                                                                      <  2:725806/138‑1 (MQ=255)

                                                 taataTGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCg                                                                                      >  1:725806/1‑138 (MQ=255)

                                                 taataTGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGtt                                                                                    >  1:14407/1‑140 (MQ=255)

                                                      tGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTa                                                                               <  2:1297340/140‑1 (MQ=255)

                                                         cATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTa                                                                            <  2:1652772/140‑1 (MQ=255)

                                                         cATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTa                                                                            <  1:810182/140‑1 (MQ=255)

                                                         cATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTa                                                                            <  2:643075/140‑1 (MQ=255)

                                                         cATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTa                                                                            <  2:405327/140‑1 (MQ=255)

                                                         acagaaTTATATGTTATAGAAACAGCCTGGTTCATTCCAAAATTGTAATGCTGCTGGCAGGTTGCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTAACATGACAAGGATATAAACGTGTTAAAGCGTTATTTAGTa                                                                            <  2:122558/136‑1 (MQ=255)

                                                           tAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTAct                                                                          >  2:1499075/1‑140 (MQ=255)

                                                               tCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCg                                                                      <  1:858437/140‑1 (MQ=255)

                                                                  tatGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTa                                                                   >  2:744758/1‑140 (MQ=255)

                                                                   atGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAg                                                                  >  1:364861/1‑140 (MQ=255)

                                                                        ataGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACg                                                             >  1:881104/1‑140 (MQ=255)

                                                                        ataGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACg                                                             >  1:209826/1‑140 (MQ=255)

                                                                         taGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACgg                                                            >  1:899736/1‑140 (MQ=255)

                                                                         taGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACgg                                                            >  1:483729/1‑140 (MQ=255)

                                                                         taGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACgg                                                            <  1:744758/140‑1 (MQ=255)

                                                                           gAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGgca                                                          <  2:1335745/140‑1 (MQ=255)

                                                                                aGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCAtt                                                     >  1:1103669/1‑140 (MQ=255)

                                                                                aGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCAtt                                                     >  2:1508231/1‑140 (MQ=255)

                                                                                aGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCAtt                                                     >  2:1360474/1‑140 (MQ=255)

                                                                                      gTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACgg                                                            >  1:383475/1‑127 (MQ=255)

                                                                                      gTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACgg                                                            <  2:383475/127‑1 (MQ=255)

                                                                                      gTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCAtt                                               >  1:1524065/1‑140 (MQ=255)

                                                                                       ttCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTa                                              <  1:1707613/140‑1 (MQ=255)

                                                                                       ttCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTa                                              >  1:1222024/1‑140 (MQ=255)

                                                                                        tCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTAc                                             <  1:956219/140‑1 (MQ=255)

                                                                                          aTTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACct                                           >  1:1609371/1‑140 (MQ=255)

                                                                                            tACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttc                                         >  2:1119165/1‑140 (MQ=255)

                                                                                            tACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttc                                         >  1:1350066/1‑140 (MQ=255)

                                                                                             aCAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttct                                        <  1:1378609/140‑1 (MQ=255)

                                                                                             aCAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttct                                        <  2:899736/140‑1 (MQ=255)

                                                                                             aCAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttct                                        <  1:1360474/140‑1 (MQ=255)

                                                                                                aaaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTAc                                             >  2:673050/1‑132 (MQ=255)

                                                                                                aaaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTAc                                             <  1:673050/132‑1 (MQ=255)

                                                                                                 aaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTgg                                    >  1:1208135/1‑140 (MQ=255)

                                                                                                 aaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTgg                                    >  2:1088514/1‑140 (MQ=255)

                                                                                                   ttGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGtt                                  >  2:1390456/1‑140 (MQ=255)

                                                                                                     gTAATGCTGCTGTAAGGCTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATTTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTaa                                <  2:1524065/140‑1 (MQ=255)

                                                                                                          gctgctGTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCg                           <  2:364861/140‑1 (MQ=255)

                                                                                                            tgctgTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGca                         <  2:1222024/140‑1 (MQ=255)

                                                                                                             gctgTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcac                        >  1:1476161/1‑140 (MQ=255)

                                                                                                             gctgTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcac                        >  1:1345506/1‑140 (MQ=255)

                                                                                                              ctgTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcaca                       <  2:89531/140‑1 (MQ=255)

                                                                                                              ctgTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcaca                       >  1:830546/1‑140 (MQ=255)

                                                                                                              ctgTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcaca                       <  2:483729/140‑1 (MQ=255)

                                                                                                              ctgTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcaca                       <  1:1390456/140‑1 (MQ=255)

                                                                                                              ctgTAAGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcaca                       >  2:109674/1‑140 (MQ=255)

                                                                                                                  aaGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCAcaacaa                   <  1:1033769/140‑1 (MQ=255)

                                                                                                                  aaGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCAcaacaa                   <  2:1663794/140‑1 (MQ=255)

                                                                                                                  aaGGTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCAcaacaa                   <  2:14407/140‑1 (MQ=255)

                                                                                                                    ggTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACaaaa                 <  1:1182023/140‑1 (MQ=255)

                                                                                                                    ggTTACCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACaaaa                 <  1:983666/140‑1 (MQ=255)

                                                                                                                        aCCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACAtt             >  2:414114/1‑140 (MQ=255)

                                                                                                                        aCCCTGGACGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACAtt             >  1:1476120/1‑140 (MQ=255)

                                                                                                                               aCGCTTTTCCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCg      >  1:1029859/1‑140 (MQ=255)

                                                                                                                                   ttttcCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGca  >  1:316750/1‑140 (MQ=255)

CATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCA  >  NC_000913/2038780‑2039050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A