Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,058,786	G→A	T354I (ACC→ATC)	yeeO ←	FMN/FAD exporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,058,786	0	G	A	100.0%	388.7 / NA	108	T354I (ACC→ATC)	yeeO	FMN/FAD exporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (51/57); total (51/57)

Only 100 of 108 total aligned reads displayed.

ATCTCTGCTTGCGCTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGGTCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAGCGGTTTAAAATAGCTCTT  >  NC_000913/2058651‑2058919

aTCTCTGCTTGCGCTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATccc                                                                                                                                   <  2:1322991/140‑1 (MQ=255)

      gCTTGCGCTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATccc                                                                                                                             >  2:181079/1‑140 (MQ=255)

       cTTGCGCTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCg                                                                                                                            >  2:12607/1‑140 (MQ=255)

         tGCGCTATCTGCCCTACCCCCAACCTTCGACCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGc                                                                                                                          >  2:118277/1‑140 (MQ=255)

          gcgcTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCa                                                                                                                         <  2:805244/140‑1 (MQ=255)

           cgcTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCaa                                                                                                                        >  2:258155/1‑140 (MQ=255)

           cgcTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCaa                                                                                                                        >  1:818939/1‑140 (MQ=255)

            gcTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAAc                                                                                                                       >  2:1033899/1‑140 (MQ=255)

                 cTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACa                                                                                                                  >  1:1031257/1‑140 (MQ=255)

                 cTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACa                                                                                                                  >  1:1635076/1‑140 (MQ=255)

                 cTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACa                                                                                                                  >  1:731283/1‑140 (MQ=255)

                  tGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACAt                                                                                                                 <  2:818939/140‑1 (MQ=255)

                    cccTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACAttt                                                                                                               <  1:843231/140‑1 (MQ=255)

                    cccTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACAttt                                                                                                               <  1:324855/140‑1 (MQ=255)

                        aCCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGt                                                                                                           >  2:833434/1‑140 (MQ=255)

                        aCCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGt                                                                                                           >  1:858138/1‑140 (MQ=255)

                        aCCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGt                                                                                                           >  2:587852/1‑140 (MQ=255)

                        aCCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGt                                                                                                           >  1:1713133/1‑140 (MQ=255)

                          ccccAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTTATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTta                                                                                                         >  2:861788/1‑140 (MQ=255)

                          ccccAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACAttt                                                                                                               <  1:390372/134‑1 (MQ=255)

                          ccccAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACAttt                                                                                                               >  2:390372/1‑134 (MQ=255)

                          ccccAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTta                                                                                                         >  2:1222990/1‑140 (MQ=255)

                          ccccAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTta                                                                                                         >  1:1282809/1‑140 (MQ=255)

                           cccAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaa                                                                                                        <  1:1492027/140‑1 (MQ=255)

                            ccAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaat                                                                                                       >  1:1036045/1‑140 (MQ=255)

                              aaCCTTCGGCCTGTAATGATTGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     >  2:317038/1‑140 (MQ=255)

                              aaCCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     >  2:463598/1‑140 (MQ=255)

                              aaCCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     >  2:1188353/1‑140 (MQ=255)

                              aaCCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     <  1:121022/140‑1 (MQ=255)

                              aaCCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     <  2:858138/140‑1 (MQ=255)

                              aaCCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     >  2:1613637/1‑140 (MQ=255)

                              aaCCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     >  1:1648142/1‑140 (MQ=255)

                              aaCCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     <  1:391576/140‑1 (MQ=255)

                              aaCCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTtaataa                                                                                                     >  2:605777/1‑140 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTTATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                <  1:861788/140‑1 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                >  2:364889/1‑140 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                <  1:983539/140‑1 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                <  2:1282809/140‑1 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                >  1:1201990/1‑140 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                >  2:1398110/1‑140 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                <  1:890478/140‑1 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                <  2:1501624/140‑1 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                <  2:385077/140‑1 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                >  1:66327/1‑140 (MQ=255)

                                   tCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAc                                                                                                <  1:625078/140‑1 (MQ=255)

                                    cGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAcc                                                                                               <  2:1648358/140‑1 (MQ=255)

                                    cGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAcc                                                                                               >  1:1159086/1‑140 (MQ=255)

                                    cGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGAcc                                                                                               >  2:501005/1‑140 (MQ=255)

                                      accTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCAc                                                                                             <  1:118277/139‑1 (MQ=255)

                                        cTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTg                                                                                           <  2:420008/140‑1 (MQ=255)

                                          gTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGt                                                                                         <  2:1563703/140‑1 (MQ=255)

                                          gTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGt                                                                                         <  1:12607/140‑1 (MQ=255)

                                                 tCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCg                                                                                                  >  2:280848/1‑124 (MQ=255)

                                                  cGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAaca                                                                                 <  1:1398110/140‑1 (MQ=255)

                                                     aGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCAc                                                                                             >  2:924256/1‑125 (MQ=255)

                                                     aGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCAc                                                                                             <  1:924256/125‑1 (MQ=255)

                                                     aGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTg                                                                              >  2:1207202/1‑140 (MQ=255)

                                                     aGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTg                                                                              >  2:497650/1‑140 (MQ=255)

                                                     aGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTg                                                                              >  1:21931/1‑140 (MQ=255)

                                                     aGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTg                                                                              >  1:415979/1‑140 (MQ=255)

                                                            gagCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGac                                                                       >  1:1288276/1‑140 (MQ=255)

                                                             agCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGaca                                                                      >  1:883077/1‑140 (MQ=255)

                                                                cGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTc                                                                   <  1:1188353/140‑1 (MQ=255)

                                                                cGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTc                                                                   <  1:1671308/140‑1 (MQ=255)

                                                                  aGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTcgc                                                                 >  2:8372/1‑140 (MQ=255)

                                                                  aGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTcgc                                                                 <  2:731283/140‑1 (MQ=255)

                                                                  aGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTcgc                                                                 <  2:1635076/140‑1 (MQ=255)

                                                                  aGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTcgc                                                                 <  1:587852/140‑1 (MQ=255)

                                                                      cACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGa                                                             <  2:1201990/140‑1 (MQ=255)

                                                                            cGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCa                                                       <  1:1033899/140‑1 (MQ=255)

                                                                            cGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCa                                                       <  2:732309/140‑1 (MQ=255)

                                                                            cGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCa                                                       <  2:1304032/140‑1 (MQ=255)

                                                                              ggTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAAt                                                     <  1:822571/140‑1 (MQ=255)

                                                                                tAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACGCGCGGGAATACCAATcc                                                   >  2:1522273/1‑140 (MQ=255)

                                                                                 aaGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATccc                                                  <  1:407448/140‑1 (MQ=255)

                                                                                    ttGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCAt                                               <  2:370861/140‑1 (MQ=255)

                                                                                    ttGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCAt                                               <  1:1547496/140‑1 (MQ=255)

                                                                                    ttGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCAt                                               <  1:1613637/140‑1 (MQ=255)

                                                                                     tGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATg                                              <  1:647940/140‑1 (MQ=255)

                                                                                     tGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATg                                              <  2:1648142/140‑1 (MQ=255)

                                                                                     tGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATg                                              <  2:415979/140‑1 (MQ=255)

                                                                                      gctAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGa                                             <  2:1159086/138‑1 (MQ=255)

                                                                                      gATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGa                                             >  2:529745/1‑140 (MQ=255)

                                                                                       aTAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGAc                                            <  1:181079/140‑1 (MQ=255)

                                                                                           gagCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTcc                                        <  2:66327/140‑1 (MQ=255)

                                                                                            agCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTccc                                       >  1:91291/1‑140 (MQ=255)

                                                                                              ccGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCa                                                <  1:845481/129‑1 (MQ=255)

                                                                                              ccGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCa                                                >  2:845481/1‑129 (MQ=255)

                                                                                              ccGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAg                                     >  1:288087/1‑140 (MQ=255)

                                                                                                 cAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATa                                  >  1:1526610/1‑140 (MQ=255)

                                                                                                      gAAAACGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGa                                             <  2:819438/124‑1 (MQ=255)

                                                                                                        aaaCGCGATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTaa                           >  1:926912/1‑140 (MQ=255)

                                                                                                            gcgATAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGCAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAAtt                       <  1:1222990/140‑1 (MQ=255)

                                                                                                               aTAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAg                    <  2:1713133/140‑1 (MQ=255)

                                                                                                               aTAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAg                    <  2:1036045/140‑1 (MQ=255)

                                                                                                               aTAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAg                    <  1:605777/140‑1 (MQ=255)

                                                                                                               aTAAAATTTCCGGCAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAg                    <  1:825807/140‑1 (MQ=255)

                                                                                                                            cAATAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAGCGGTTTAAAATAg       <  1:258155/140‑1 (MQ=255)

                                                                                                                               tAACACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAGCGGTTTAAAATAGctc    >  1:1635109/1‑140 (MQ=255)

                                                                                                                                aaCACTGATCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAGCGGTTTAAAATAGctct   <  2:1635109/140‑1 (MQ=255)

ATCTCTGCTTGCGCTATCTGCCCTACCCCCAACCTTCGGCCTGTAATGATCGTAGAAGCAGAGCCGAGCGCACTTCCGGGTAAGTTGATAAGAGCCGCAATTGAAAACGCGATAAAATTTCCGGCAATAACACTGGTCCCCATCCCGGCAACGAACATTTGGGTTAATAACCGACCACTGGTAAATAACACTGATTCGACACTCGCGGGAATACCAATCCCCATGACTTCCCAGATAATGCTAAAATTCAGCGGTTTAAAATAGCTCTT  >  NC_000913/2058651‑2058919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A