Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,281,654 T→C G341G (GGT→GGC)  radD → putative DNA repair helicase RadD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,281,6540TC100.0% 314.2 / NA 86G341G (GGT→GGC) radDputative DNA repair helicase RadD
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/47);  total (39/47)

AGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGTCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTCTGCC  >  NC_000913/2281527‑2281784
                                                                                                                               |                                                                                                                                  
aGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCt                                                                                                                        >  2:897348/1‑140 (MQ=255)
aGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCt                                                                                                                        <  1:253346/140‑1 (MQ=255)
aGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCt                                                                                                                        >  1:1259246/1‑140 (MQ=255)
aGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCt                                                                                                                        <  2:400524/140‑1 (MQ=255)
  cGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTcc                                                                                                                      >  1:1246890/1‑140 (MQ=255)
              cTGGTCAACGTCGCGGTACTGCCCACCGCATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTAAGTCTTTACCAACAAATTGTCGGGCGCGGCCTCCGTCTCGCTCCGGGCAAGACTGa                                                                                                          <  2:1012673/140‑1 (MQ=255)
              cTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCGGCGTCTCGCTCCGGGCAAGACTGa                                                                                                          <  1:1406255/140‑1 (MQ=255)
               tGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGAt                                                                                                         <  2:115595/140‑1 (MQ=255)
               tGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGAt                                                                                                         >  1:1435255/1‑140 (MQ=255)
                 gTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTg                                                                                                       >  1:347861/1‑140 (MQ=255)
                 gTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTg                                                                                                       >  1:309277/1‑140 (MQ=255)
                 gTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTg                                                                                                       >  1:961767/1‑140 (MQ=255)
                   cAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCt                                                                                                     <  1:547012/140‑1 (MQ=255)
                   cAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCt                                                                                                     <  2:1323930/140‑1 (MQ=255)
                   cAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCt                                                                                                     <  2:1420971/140‑1 (MQ=255)
                    aaCGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCtt                                                                                                    <  2:961767/140‑1 (MQ=255)
                       gTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAAt                                                                                                 >  2:1181623/1‑140 (MQ=255)
                       gTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAAt                                                                                                 >  1:1003739/1‑140 (MQ=255)
                       gTCGCGGTACTGACCACCGGATTTGACGCCCCACACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAAt                                                                                                 >  1:480394/1‑140 (MQ=255)
                        tCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAAtt                                                                                                <  1:1371942/140‑1 (MQ=255)
                        tCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAAtt                                                                                                <  2:347861/140‑1 (MQ=255)
                           cgGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCtt                                                                                             >  1:877706/1‑140 (MQ=255)
                                cTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTa                                                                                        >  2:849870/1‑140 (MQ=255)
                                cTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGACGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTa                                                                                        >  2:969963/1‑140 (MQ=255)
                                  gACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATg                                                                                      <  2:877706/140‑1 (MQ=255)
                                      accGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCggg                                                                                  <  2:1259246/140‑1 (MQ=255)
                                        cGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTa                                                                                >  1:1700155/1‑140 (MQ=255)
                                           aTTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAACTCTTGATTATGCGGGTAATc                                                                             <  2:580405/140‑1 (MQ=255)
                                             ttGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCt                                                                           <  1:844824/140‑1 (MQ=255)
                                             ttGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCt                                                                           <  2:1151635/140‑1 (MQ=255)
                                               gACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCa                                                                         >  2:289847/1‑140 (MQ=255)
                                                aCGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCAc                                                                        <  1:175919/140‑1 (MQ=255)
                                                 cGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACg                                                                       <  2:276867/140‑1 (MQ=255)
                                                   ccccGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGAt                                                                     <  2:1003739/140‑1 (MQ=255)
                                                    cccGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGAtc                                                                    >  1:1299728/1‑140 (MQ=255)
                                                      cGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGAtctc                                                                  >  2:577104/1‑140 (MQ=255)
                                                        cACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCGGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTa                                                                <  2:1435255/140‑1 (MQ=255)
                                                        cACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTa                                                                <  1:163526/140‑1 (MQ=255)
                                                          cGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTAcg                                                              <  1:856518/140‑1 (MQ=255)
                                                          cGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTAcg                                                              <  2:1299728/140‑1 (MQ=255)
                                                             cGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACgcgc                                                           <  2:631317/140‑1 (MQ=255)
                                                              gATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTa                                                                >  2:1693023/1‑134 (MQ=255)
                                                              gATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTa                                                                <  1:1693023/134‑1 (MQ=255)
                                                               aTCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCg                                                         <  2:309277/140‑1 (MQ=255)
                                                               aTCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCg                                                         <  1:897348/140‑1 (MQ=255)
                                                                tCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCgg                                                        >  2:1496119/1‑140 (MQ=255)
                                                                 cTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGa                                                       <  2:1146916/140‑1 (MQ=255)
                                                                  ttATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGaa                                                      <  2:213132/140‑1 (MQ=255)
                                                                   tATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAg                                                     >  2:1680031/1‑140 (MQ=255)
                                                                   tATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAg                                                     >  2:820067/1‑140 (MQ=255)
                                                                    aTCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGACGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGt                                                    <  1:969963/140‑1 (MQ=255)
                                                                         cATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTa                                               >  1:1507548/1‑140 (MQ=255)
                                                                          aTTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTac                                              >  2:1090046/1‑140 (MQ=255)
                                                                              tGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCa                                          >  1:1535623/1‑140 (MQ=255)
                                                                                cgcCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCaaa                                        >  1:1364001/1‑140 (MQ=255)
                                                                                cgcCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCaaa                                        >  1:771338/1‑140 (MQ=255)
                                                                                    cTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGc                                    <  2:1700155/140‑1 (MQ=255)
                                                                                       ccGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCaaa                                 >  2:730996/1‑140 (MQ=255)
                                                                                          aaTCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGt                              <  1:1243511/140‑1 (MQ=255)
                                                                                             cAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGAc                           <  1:1087877/140‑1 (MQ=255)
                                                                                             cAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGAc                           <  1:218410/140‑1 (MQ=255)
                                                                                               gTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACaa                         >  2:822744/1‑140 (MQ=255)
                                                                                               gTGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACaa                         >  1:792464/1‑140 (MQ=255)
                                                                                                tGAGTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAAc                        >  2:1418849/1‑140 (MQ=255)
                                                                                                   gTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGtt                     <  1:1090046/140‑1 (MQ=255)
                                                                                                   gTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGtt                     <  2:1535623/140‑1 (MQ=255)
                                                                                                   gTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGtt                     <  1:730996/140‑1 (MQ=255)
                                                                                                   gTCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATCCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGtt                     <  2:1364001/140‑1 (MQ=255)
                                                                                                    tCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTc                    <  2:480394/140‑1 (MQ=255)
                                                                                                    tCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTc                    <  1:1181623/140‑1 (MQ=255)
                                                                                                    tCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTc                    >  2:655853/1‑140 (MQ=255)
                                                                                                    tCTTTACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTc                    >  2:712612/1‑140 (MQ=255)
                                                                                                       ttACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCgg                 <  2:100211/140‑1 (MQ=255)
                                                                                                       ttACCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCgg                 <  1:1418849/140‑1 (MQ=255)
                                                                                                         aCCAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTa               >  1:1358147/1‑140 (MQ=255)
                                                                                                          ccAACAAATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTAc              <  1:620957/140‑1 (MQ=255)
                                                                                                              caaATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGt          >  2:947891/1‑140 (MQ=255)
                                                                                                              caaATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGt          >  2:823591/1‑140 (MQ=255)
                                                                                                              caaATTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTAACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGt          >  2:688906/1‑140 (MQ=255)
                                                                                                                aaTTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGttt        <  1:302082/140‑1 (MQ=255)
                                                                                                                aaTTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGttt        >  1:1653772/1‑140 (MQ=255)
                                                                                                                 aTTGTCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGtttt       <  1:849870/140‑1 (MQ=255)
                                                                                                                     tCGGGCGCGGCCTGCGTCTCGCTCCTGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTctgc   >  1:1099423/1‑140 (MQ=255)
                                                                                                                     tCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTctgc   >  1:675202/1‑140 (MQ=255)
                                                                                                                     tCGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTAACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTctgc   <  1:688906/140‑1 (MQ=255)
                                                                                                                      cGGGCGCGGCCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTctgcc  <  1:947891/140‑1 (MQ=255)
                                                                                                                               |                                                                                                                                  
AGCGTTTTCGCTATCTGGTCAACGTCGCGGTACTGACCACCGGATTTGACGCCCCGCACGTCGATCTTATCGCCATTCTGCGCCCTACCGAATCAGTGAGTCTTTACCAACAAATTGTCGGGCGCGGTCTGCGTCTCGCTCCGGGCAAGACTGATTGCTTAATTCTTGATTATGCGGGTAATCCTCACGATCTCTACGCGCCGGAAGTTGGTACACCAAAAGGCAAAAGTGACAACGTTCCGGTACAGGTTTTCTGCC  >  NC_000913/2281527‑2281784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A