Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,372,484	A→G	N526S (AAC→AGC)	arnT →	lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,372,484	0	A	G	100.0%	354.1 / NA	95	N526S (AAC→AGC)	arnT	lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (44/51); total (44/51)

TTGAAATACGGCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAACAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGTTGCCGGGCAGTTGTGT  >  NC_000913/2372348‑2372613

ttGAAATGCGGCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATcagcag                                                                                                                                >  2:1049081/1‑140 (MQ=255)

    aaTACGGCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGtctc                                                                                                                            <  2:1320343/140‑1 (MQ=255)

      tACGGCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGc                                                                                                                          >  1:93914/1‑140 (MQ=255)

        cGGCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCa                                                                                                                        >  1:674062/1‑140 (MQ=255)

        cGGCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCa                                                                                                                        >  2:683949/1‑140 (MQ=255)

          gCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCAtt                                                                                                                      <  1:291995/140‑1 (MQ=255)

          gCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCAtt                                                                                                                      >  2:1553042/1‑140 (MQ=255)

          gCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCAtt                                                                                                                      >  2:692612/1‑140 (MQ=255)

             ttAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTccg                                                                                                                   >  2:1409132/1‑140 (MQ=255)

              tAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTccgc                                                                                                                  <  2:718047/140‑1 (MQ=255)

               aaTTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTccgcc                                                                                                                 <  1:521377/140‑1 (MQ=255)

                aTTAACCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTccgccc                                                                                                                <  2:1481355/140‑1 (MQ=255)

                  tATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTccgcccgc                                                                                                              <  2:93914/140‑1 (MQ=255)

                    tCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTccgcccgc                                                                                                              <  1:1329027/138‑1 (MQ=255)

                    tCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTccgcccgc                                                                                                              >  2:1329027/1‑138 (MQ=255)

                     ccGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGa                                                                                                           >  1:1421536/1‑140 (MQ=255)

                     ccGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGa                                                                                                           >  2:1078488/1‑140 (MQ=255)

                     ccGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGa                                                                                                           >  2:1047820/1‑140 (MQ=255)

                      cGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGAt                                                                                                          <  2:478699/140‑1 (MQ=255)

                         aTGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGcc                                                                                                       >  1:67310/1‑140 (MQ=255)

                           gCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCat                                                                                                     <  2:780785/140‑1 (MQ=255)

                             gAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCatcg                                                                                                   <  1:1357454/140‑1 (MQ=255)

                             gAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCatcg                                                                                                   <  2:949293/140‑1 (MQ=255)

                                       tttGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGa                                                                                         <  1:683949/140‑1 (MQ=255)

                                            cAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTc                                                                                    <  2:1421536/140‑1 (MQ=255)

                                             aGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGc                                                                                       <  2:119980/136‑1 (MQ=255)

                                             aGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGc                                                                                       >  1:119980/1‑136 (MQ=255)

                                             aGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCt                                                                                   >  2:1340491/1‑140 (MQ=255)

                                             aGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCt                                                                                   <  1:1104647/140‑1 (MQ=255)

                                               cGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTgg                                                                                 <  2:400914/140‑1 (MQ=255)

                                                ggTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGt                                                                                >  2:37534/1‑140 (MQ=255)

                                                ggTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGt                                                                                <  2:254532/140‑1 (MQ=255)

                                                  tgatgaGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGc                                                                              <  1:1078488/140‑1 (MQ=255)

                                                  tgatgaGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGc                                                                              <  1:975677/140‑1 (MQ=255)

                                                  tgatgaGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGc                                                                              <  2:2461/140‑1 (MQ=255)

                                                  tgatgaGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGc                                                                              <  2:843449/140‑1 (MQ=255)

                                                    atgaGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTc                                                                                    <  1:1474039/132‑1 (MQ=255)

                                                    atgaGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTc                                                                                    >  2:1474039/1‑132 (MQ=255)

                                                           cGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGc                                                                              <  2:565435/131‑1 (MQ=255)

                                                           cGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGc                                                                              >  1:565435/1‑131 (MQ=255)

                                                           cGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGt                                                                     <  1:692612/140‑1 (MQ=255)

                                                            gCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTa                                                                    <  1:1553042/140‑1 (MQ=255)

                                                            gCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTa                                                                    >  2:931532/1‑140 (MQ=255)

                                                             cAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTAt                                                                   <  1:940645/140‑1 (MQ=255)

                                                             cAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTAt                                                                   <  1:1049081/140‑1 (MQ=255)

                                                                aCTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGt                                                                <  1:1013972/140‑1 (MQ=255)

                                                                   ggCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTccc                                                             >  2:1676220/1‑140 (MQ=255)

                                                                          tCAACATCGTCAGGAGGGGATTATTGCTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGAt                                                      <  2:1616181/140‑1 (MQ=255)

                                                                          tCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGAt                                                      >  1:235863/1‑140 (MQ=255)

                                                                          tCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGAt                                                      >  2:1168903/1‑140 (MQ=255)

                                                                              cATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGAt                                                      >  1:437821/1‑136 (MQ=255)

                                                                              cATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGAt                                                      <  2:437821/136‑1 (MQ=255)

                                                                              cATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTgg                                                  >  2:296674/1‑140 (MQ=255)

                                                                              cATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTgg                                                  >  2:864714/1‑140 (MQ=255)

                                                                              cATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTgg                                                  >  2:237355/1‑140 (MQ=255)

                                                                               aTCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGc                                                 <  2:131616/140‑1 (MQ=255)

                                                                               aTCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGc                                                 <  2:299159/140‑1 (MQ=255)

                                                                               aTCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGc                                                 <  1:1409132/140‑1 (MQ=255)

                                                                               aTCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGc                                                 <  1:531059/140‑1 (MQ=255)

                                                                               aTCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGc                                                 <  2:171917/140‑1 (MQ=255)

                                                                                tCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGCCCGCGATGAAGATATCAGCAGTCCCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCt                                                <  2:771412/140‑1 (MQ=255)

                                                                                   tCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGAt                                                      >  1:213931/1‑131 (MQ=255)

                                                                                   tCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGAt                                                      <  2:213931/131‑1 (MQ=255)

                                                                                   tCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGGCTGGCGCTGATTCAGTATCGTCCCAAATGATCTGGCTAAc                                             >  2:1057817/1‑140 (MQ=255)

                                                                                     aggaggGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACAt                                           <  1:237355/140‑1 (MQ=255)

                                                                                        aggGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAg                                        >  2:1650601/1‑140 (MQ=255)

                                                                                          gggATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGc                                                 <  1:1320021/129‑1 (MQ=255)

                                                                                          gggATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGc                                                 >  2:1320021/1‑129 (MQ=255)

                                                                                          gggATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTc                                      >  1:1327447/1‑140 (MQ=255)

                                                                                          gggATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTc                                      >  1:1605891/1‑140 (MQ=255)

                                                                                           ggATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCt                                     >  2:915538/1‑140 (MQ=255)

                                                                                            gATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCtt                                    <  1:915538/140‑1 (MQ=255)

                                                                                            gATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCtt                                    >  2:666801/1‑140 (MQ=255)

                                                                                                attaCTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGcc                                <  1:181484/140‑1 (MQ=255)

                                                                                                 ttaCTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCa                               <  2:1152468/140‑1 (MQ=255)

                                                                                                  taCTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAg                              <  1:1340491/140‑1 (MQ=255)

                                                                                                   aCTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAgc                             <  1:1047820/140‑1 (MQ=255)

                                                                                                      ctcGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGt                                       >  2:438621/1‑127 (MQ=255)

                                                                                                      ctcGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGt                                       <  1:438621/127‑1 (MQ=255)

                                                                                                       tcGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAgcttgc                         >  2:1251894/1‑140 (MQ=255)

                                                                                                       tcGTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAgcttgc                         >  1:1423196/1‑140 (MQ=255)

                                                                                                         gTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAgcttgctt                       >  2:1024261/1‑140 (MQ=255)

                                                                                                         gTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAgcttgctt                       >  2:839446/1‑140 (MQ=255)

                                                                                                         gTGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAgcttgctt                       >  2:19766/1‑140 (MQ=255)

                                                                                                          tGCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTa                      >  2:1209894/1‑140 (MQ=255)

                                                                                                           gCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAg                     <  2:1327447/140‑1 (MQ=255)

                                                                                                           gCTTTCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAg                     >  2:1357428/1‑140 (MQ=255)

                                                                                                              ttCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGt                  >  2:883048/1‑140 (MQ=255)

                                                                                                              ttCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGt                  >  1:1460978/1‑140 (MQ=255)

                                                                                                               tCGGTTGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGtt                 >  2:647457/1‑140 (MQ=255)

                                                                                                                    tGACCGCGATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGTTGCCgg            <  1:1564189/140‑1 (MQ=255)

                                                                                                                        cgcgATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGTTGCCGGGCAg        <  1:1024261/140‑1 (MQ=255)

                                                                                                                        cgcgATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGTTGCCGGGCAg        <  1:1251894/140‑1 (MQ=255)

                                                                                                                          cgATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGTTGCCGGGCAGtt      <  1:1168903/140‑1 (MQ=255)

                                                                                                                           gATGAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGTTGCCGGGCAGTtg     >  1:875171/1‑140 (MQ=255)

                                                                                                                              gAAGATATCAGCAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGTTGCCGGGCAGTTgtgt  <  2:67310/140‑1 (MQ=255)

TTGAAATACGGCCTTAATTATCCGGATGCGAAAGGGAGATTTGTCAGCGGTGATGAGTTCGCAAACTGGCTTAATCAACATCGTCAGGAGGGGATTATTACTCTCGTGCTTTCGGTTGACCGCGATGAAGATATCAACAGTCTCGCCATTCCGCCCGCAGATGCCATCGATCGTCAGGAGCGTCTGGTGCTGATTCAGTATCGTCCCAAATGATCTGGCTAACATTAGTCTTTGCCAGCTTGCTTAGCGTTGCCGGGCAGTTGTGT  >  NC_000913/2372348‑2372613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A