Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,704,509 T→C G267G (GGA→GGG)  lepB ← signal peptidase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,704,5090TC100.0% 363.8 / NA 99G267G (GGA→GGG) lepBsignal peptidase I
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (42/57);  total (42/57)

Only 100 of 103 total aligned reads displayed.

GTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGTCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGTCTCTTTACGCTCGGAAAGACGAA  >  NC_000913/2704372‑2704645
                                                                                                                                         |                                                                                                                                        
gTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGccc                                                                                                                                        >  2:828451/1‑140 (MQ=255)
 tCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGcccc                                                                                                                                       >  1:1117159/1‑140 (MQ=255)
   ggCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCgg                                                                                                                                     >  2:216829/1‑140 (MQ=255)
      cATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCggagg                                                                                                                                  >  2:907526/1‑140 (MQ=255)
      cATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCggagg                                                                                                                                  >  2:1292516/1‑140 (MQ=255)
       aTTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCggagga                                                                                                                                 <  1:216829/140‑1 (MQ=255)
        ttCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGaa                                                                                                                                >  1:1637420/1‑140 (MQ=255)
          cGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACa                                                                                                                              >  2:519357/1‑140 (MQ=255)
           gCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACaa                                                                                                                             <  2:422773/140‑1 (MQ=255)
            ccTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAAt                                                                                                                            <  2:1312372/140‑1 (MQ=255)
             cttcttGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATc                                                                                                                           <  2:1117159/140‑1 (MQ=255)
                   gCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGtt                                                                                                                     >  2:1351241/1‑140 (MQ=255)
                      tATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGcc                                                                                                                  <  1:1088198/140‑1 (MQ=255)
                      tATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGcc                                                                                                                  <  2:826935/140‑1 (MQ=255)
                       aTCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCa                                                                                                                 <  1:834211/140‑1 (MQ=255)
                         cGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAgt                                                                                                               >  2:114035/1‑140 (MQ=255)
                            aGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAgttgt                                                                                                            <  1:663691/140‑1 (MQ=255)
                              cTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGttgttg                                                                                                          >  1:957783/1‑140 (MQ=255)
                                cATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGcc                                                                                                        <  2:1637420/140‑1 (MQ=255)
                                 aTCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGccc                                                                                                       >  1:1519787/1‑140 (MQ=255)
                                    cAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTgg                                                                                                    <  1:1350592/140‑1 (MQ=255)
                                     aGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgc                                                                                                   <  2:81697/140‑1 (MQ=255)
                                      gATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  <  2:888977/140‑1 (MQ=255)
                                      gATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  <  1:907526/140‑1 (MQ=255)
                                      gATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  <  2:1265329/140‑1 (MQ=255)
                                      gATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  <  2:1331527/140‑1 (MQ=255)
                                        tAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  <  2:1501887/138‑1 (MQ=255)
                                        tAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  >  1:1501887/1‑138 (MQ=255)
                                         aGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgctgct                                                                                               >  2:435792/1‑140 (MQ=255)
                                         aGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgctgct                                                                                               <  2:1519787/140‑1 (MQ=255)
                                         aGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgctgct                                                                                               <  1:1292516/140‑1 (MQ=255)
                                          gCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGctgctg                                                                                              >  2:1560346/1‑140 (MQ=255)
                                           ccGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGTCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCGGCTgg                                                                                             >  2:1282805/1‑140 (MQ=255)
                                           ccGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGTCCTGGCTGCTgg                                                                                             >  1:167185/1‑140 (MQ=255)
                                           ccGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  >  1:1645805/1‑135 (MQ=255)
                                           ccGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  >  2:137697/1‑135 (MQ=255)
                                           ccGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  <  2:1645805/135‑1 (MQ=255)
                                           ccGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgct                                                                                                  <  1:137697/135‑1 (MQ=255)
                                           ccGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTgg                                                                                             >  2:569512/1‑140 (MQ=255)
                                           ccGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTgg                                                                                             >  2:1029042/1‑140 (MQ=255)
                                            cGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGt                                                                                            >  2:881596/1‑140 (MQ=255)
                                              ttGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTaa                                                                                          >  1:1625490/1‑140 (MQ=255)
                                              ttGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTaa                                                                                          >  1:1045604/1‑140 (MQ=255)
                                              ttGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTaa                                                                                          >  1:1529551/1‑140 (MQ=255)
                                               tGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAAt                                                                                         <  1:1002352/140‑1 (MQ=255)
                                               tGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAAt                                                                                         <  1:1532523/140‑1 (MQ=255)
                                               tGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAAt                                                                                         <  1:64855/140‑1 (MQ=255)
                                                 cccGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATAc                                                                                       >  2:1410306/1‑140 (MQ=255)
                                                   cgaccgacCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACAt                                                                                     <  1:426773/140‑1 (MQ=255)
                                                     accgaccAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGTTTGTCGCCCATCATGAACTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATcc                                                                                   <  2:1529551/140‑1 (MQ=255)
                                                     accgaccAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATcc                                                                                   <  2:404827/140‑1 (MQ=255)
                                                     accgaccAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATcc                                                                                   <  1:1181897/140‑1 (MQ=255)
                                                     accgaccAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATcc                                                                                   <  1:1427963/140‑1 (MQ=255)
                                                     accgaccAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATcc                                                                                   <  1:963479/140‑1 (MQ=255)
                                                         accAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgctgc                                                                                                <  2:1155209/123‑1 (MQ=255)
                                                         accAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGgctgc                                                                                                >  1:1155209/1‑123 (MQ=255)
                                                         accAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCAc                                                                               >  1:1579300/1‑140 (MQ=255)
                                                         accAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCAc                                                                               >  1:473191/1‑140 (MQ=255)
                                                         accAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCAc                                                                               >  2:1202188/1‑140 (MQ=255)
                                                              aTTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGAt                                                                          <  1:814821/140‑1 (MQ=255)
                                                                     tCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTgcgc                                                                   <  2:263582/140‑1 (MQ=255)
                                                                       cGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCaa                                                                 <  2:167185/140‑1 (MQ=255)
                                                                        ggCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAAt                                                                >  1:1190264/1‑140 (MQ=255)
                                                                           acaAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCgg                                                             <  1:1011524/140‑1 (MQ=255)
                                                                           acaAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCgg                                                             <  1:881596/140‑1 (MQ=255)
                                                                            caAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGc                                                            <  1:569512/140‑1 (MQ=255)
                                                                             aaaGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCa                                                           <  1:1192034/140‑1 (MQ=255)
                                                                             aaaGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCa                                                           <  1:190386/140‑1 (MQ=255)
                                                                                         aCGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGc                                               >  2:53131/1‑140 (MQ=255)
                                                                                               gTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCg                                         >  1:1407449/1‑140 (MQ=255)
                                                                                                tCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGt                                        >  2:737743/1‑140 (MQ=255)
                                                                                                 ccGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTc                                       >  1:973574/1‑140 (MQ=255)
                                                                                                 ccGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTc                                       >  1:1460588/1‑140 (MQ=255)
                                                                                                 ccGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTc                                       >  2:285759/1‑140 (MQ=255)
                                                                                                 ccGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTc                                       <  1:53131/140‑1 (MQ=255)
                                                                                                   gcgcTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTcac                                     <  2:1407449/140‑1 (MQ=255)
                                                                                                    cgcTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTcaca                                    <  1:1351241/140‑1 (MQ=255)
                                                                                                    cgcTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTcaca                                    <  1:285759/140‑1 (MQ=255)
                                                                                                     gcTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACAt                                   <  2:946239/140‑1 (MQ=255)
                                                                                                     gcTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACAt                                   <  1:519357/140‑1 (MQ=255)
                                                                                                          tgtCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCGCTGTCAGAATGCGGTGCGTCACATCAccc                              <  1:1202188/140‑1 (MQ=255)
                                                                                                          tgtCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTcaca                                    <  1:1386111/134‑1 (MQ=255)
                                                                                                          tgtCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCa                                 <  2:259834/137‑1 (MQ=255)
                                                                                                          tgtCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCa                                 >  1:259834/1‑137 (MQ=255)
                                                                                                          tgtCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCAccc                              >  1:607783/1‑140 (MQ=255)
                                                                                                           gtCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCa                             <  1:1560346/140‑1 (MQ=255)
                                                                                                           gtCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCa                             <  1:737743/140‑1 (MQ=255)
                                                                                                           gtCGCGGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCa                             >  1:74341/1‑140 (MQ=255)
                                                                                                              gcgGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAgtg                          <  2:884111/140‑1 (MQ=255)
                                                                                                              gcgGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAgtg                          <  2:1508867/140‑1 (MQ=255)
                                                                                                              gcgGTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAgtg                          <  2:144463/140‑1 (MQ=255)
                                                                                                                ggTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGtc                        <  2:1045604/140‑1 (MQ=255)
                                                                                                                 gTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCAcc                               >  2:530333/1‑132 (MQ=255)
                                                                                                                 gTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCAcc                               <  1:530333/132‑1 (MQ=255)
                                                                                                                 gTTGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGtct                       >  1:254616/1‑140 (MQ=255)
                                                                                                                   tGTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGTctct                     >  2:653395/1‑140 (MQ=255)
                                                                                                                    gTCGCCCATCATGAAGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGTCTCtt                    <  1:114035/140‑1 (MQ=255)
                                                                                                                                  aGTATTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGTCTCTTTACGCTCGGAAAGa      >  2:1657377/1‑140 (MQ=255)
                                                                                                                                     aTTGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGTCTCTTTACGCTCGGAAAGACGa   <  1:1410306/140‑1 (MQ=255)
                                                                                                                                      ttGCCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGTCTCTTTACGCTCGGAAAGACGaa  <  1:653395/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACAAAGCCCCAGTAACGGCTGTCCGCGCTGTTGTCGCGGTTGTCGCCCATCATGAAGTATTGTCCCGGAGGAACAATCCAGGTTGCCAGTTGTTGCCCTGGCTGCTGGTAATACATCCCCACCTGATCCTGCGCAATCGGCACTGTCAGAATGCGGTGCGTCACATCACCCAGTGTCTCTTTACGCTCGGAAAGACGAA  >  NC_000913/2704372‑2704645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A