Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,723,268	A→G	D181G (GAC→GGC)	pssA →	phosphatidylserine synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,723,268	0	A	G	100.0%	375.1 / NA	99	D181G (GAC→GGC)	pssA	phosphatidylserine synthase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (50/49); total (50/49)

GTTCTGCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGACATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTGATGCCGC  >  NC_000913/2723132‑2723403

gtTCTGCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTTAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCAt                                                                                                                                      >  1:530377/1‑140 (MQ=255)

 ttCTGCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGTGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCAtt                                                                                                                                     <  2:1341559/140‑1 (MQ=255)

 ttCTGCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCAtt                                                                                                                                     <  2:418089/140‑1 (MQ=255)

  tCTGCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTa                                                                                                                                    >  2:20589/1‑140 (MQ=255)

  tCTGCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTa                                                                                                                                    >  2:1702687/1‑140 (MQ=255)

  tCTGCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTa                                                                                                                                    >  2:816000/1‑140 (MQ=255)

     gCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCa                                                                                                                                       >  1:1643811/1‑134 (MQ=255)

         tttAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTTAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGa                                                                                                                             <  2:530377/140‑1 (MQ=255)

         tttAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGa                                                                                                                             <  1:1026706/140‑1 (MQ=255)

         tttAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGa                                                                                                                             <  1:1647459/140‑1 (MQ=255)

         tttAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGa                                                                                                                             <  2:767695/140‑1 (MQ=255)

         tttAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGa                                                                                                                             <  1:299166/140‑1 (MQ=255)

         tttAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGa                                                                                                                             >  1:731315/1‑140 (MQ=255)

         tttAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGa                                                                                                                             <  1:1294675/140‑1 (MQ=255)

         tttAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGa                                                                                                                             >  2:1557054/1‑140 (MQ=255)

              aGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATggg                                                                                                                        <  1:811927/140‑1 (MQ=255)

              aGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATggg                                                                                                                        <  1:1229969/140‑1 (MQ=255)

                gCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGtt                                                                                                                      <  1:816000/140‑1 (MQ=255)

                gCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGtt                                                                                                                      >  2:688349/1‑140 (MQ=255)

                  tttATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTac                                                                                                                    <  2:1000435/140‑1 (MQ=255)

                   ttATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTaca                                                                                                                   <  2:1108041/140‑1 (MQ=255)

                   ttATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTaca                                                                                                                   <  2:281384/140‑1 (MQ=255)

                   ttATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTaca                                                                                                                   >  2:464578/1‑140 (MQ=255)

                   ttATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTaca                                                                                                                   >  1:1263760/1‑140 (MQ=255)

                   ttATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTaca                                                                                                                   <  1:1569636/140‑1 (MQ=255)

                    tATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTacac                                                                                                                  <  2:1660422/140‑1 (MQ=255)

                    tATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTacac                                                                                                                  <  2:1183336/140‑1 (MQ=255)

                    tATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTacac                                                                                                                  <  1:807615/140‑1 (MQ=255)

                    tATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTacac                                                                                                                  <  2:264595/140‑1 (MQ=255)

                     atcatcGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTAcaca                                                                                                                 <  1:1503940/140‑1 (MQ=255)

                     atcatcGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTAcaca                                                                                                                 <  1:1557054/140‑1 (MQ=255)

                       catcGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGa                                                                                                               <  1:239205/140‑1 (MQ=255)

                       catcGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGa                                                                                                               <  2:1263760/140‑1 (MQ=255)

                       catcGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGa                                                                                                               <  1:688349/140‑1 (MQ=255)

                       catcGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGa                                                                                                               <  2:1283415/140‑1 (MQ=255)

                          cgacgaTAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTacac                                                                                                                  >  2:1326545/1‑134 (MQ=255)

                          cgacgaTAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTacac                                                                                                                  <  1:1326545/134‑1 (MQ=255)

                          cgacgaTAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAata                                                                                                            <  1:597245/140‑1 (MQ=255)

                                       cTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCcg                                                                                               >  2:733327/1‑140 (MQ=255)

                                       cTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCcg                                                                                               <  1:1429673/140‑1 (MQ=255)

                                        tttATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCcgc                                                                                              <  1:711590/140‑1 (MQ=255)

                                        tttATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCcgc                                                                                              <  2:1534166/140‑1 (MQ=255)

                                          tataGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCgcgg                                                                                            <  2:313845/140‑1 (MQ=255)

                                                 gTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAAt                                                                                     >  2:1501758/1‑140 (MQ=255)

                                                  tGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTa                                                                                       <  2:1239881/137‑1 (MQ=255)

                                                  tGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTa                                                                                       >  1:1239881/1‑137 (MQ=255)

                                                  tGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATc                                                                                    >  2:1244887/1‑140 (MQ=255)

                                                  tGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATc                                                                                    >  1:938562/1‑140 (MQ=255)

                                                    ccAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCcg                                                                                               >  1:1698912/1‑127 (MQ=255)

                                                    ccAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCcg                                                                                               <  2:1698912/127‑1 (MQ=255)

                                                         cTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGga                                                                             <  1:1609300/140‑1 (MQ=255)

                                                            aaCGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGgatga                                                                          >  2:31827/1‑140 (MQ=255)

                                                            aaCGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGgatga                                                                          >  2:1679455/1‑140 (MQ=255)

                                                            aaCGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGgatga                                                                          >  1:1217637/1‑140 (MQ=255)

                                                                 tGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTa                                                                     >  1:605366/1‑140 (MQ=255)

                                                                 tGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTa                                                                     >  1:1224484/1‑140 (MQ=255)

                                                                    ttACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATc                                                                  <  1:1501758/140‑1 (MQ=255)

                                                                      aCCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCgg                                                                >  1:1562003/1‑140 (MQ=255)

                                                                      aCCTGCATCAGCACGATAAATATCGCTACGACCATTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCgg                                                                >  1:377483/1‑140 (MQ=255)

                                                                           cATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAAt                                                                   <  2:282211/132‑1 (MQ=255)

                                                                           cATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAAt                                                                   >  1:282211/1‑132 (MQ=255)

                                                                           cATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCaaa                                                           >  1:331108/1‑140 (MQ=255)

                                                                           cATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCaaa                                                           >  2:615313/1‑140 (MQ=255)

                                                                                 cACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGccc                                                     >  2:1137837/1‑140 (MQ=255)

                                                                                  aCGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCg                                                    <  1:615313/140‑1 (MQ=255)

                                                                                     aTAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGaa                                                 >  1:1508121/1‑140 (MQ=255)

                                                                                         atatCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCa                                             <  2:151836/140‑1 (MQ=255)

                                                                                           atCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAg                                           <  2:100813/140‑1 (MQ=255)

                                                                                            tCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGa                                          >  1:26516/1‑140 (MQ=255)

                                                                                              gCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAAc                                        >  2:1473526/1‑140 (MQ=255)

                                                                                                tACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGa                                      >  1:803755/1‑140 (MQ=255)

                                                                                                  cGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGata                                    >  2:461675/1‑140 (MQ=255)

                                                                                                  cGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGata                                    <  1:1266331/140‑1 (MQ=255)

                                                                                                    aCCGTTATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATAtt                                  >  1:1507091/1‑140 (MQ=255)

                                                                                                        ttATCATCTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTc                              >  1:7789/1‑140 (MQ=255)

                                                                                                            catcTGATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGtt                          <  2:1217637/140‑1 (MQ=255)

                                                                                                                 gATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGcc                     <  1:20589/140‑1 (MQ=255)

                                                                                                                 gATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGcc                     <  2:1224484/140‑1 (MQ=255)

                                                                                                                 gATCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGcc                     <  2:605366/140‑1 (MQ=255)

                                                                                                                  aTCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCa                    >  2:1591854/1‑140 (MQ=255)

                                                                                                                  aTCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCa                    >  2:1298629/1‑140 (MQ=255)

                                                                                                                  aTCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCa                    >  1:962734/1‑140 (MQ=255)

                                                                                                                  aTCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCa                    >  1:915876/1‑140 (MQ=255)

                                                                                                                  aTCCGTAACCGTAAGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCa                    >  1:401011/1‑140 (MQ=255)

                                                                                                                     cgtaaccgtaaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGa                 >  1:1402578/1‑140 (MQ=255)

                                                                                                                       taaccgtaaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGc               >  2:23457/1‑140 (MQ=255)

                                                                                                                         accgtaaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAg                >  1:1085719/1‑137 (MQ=255)

                                                                                                                         accgtaaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAg                <  2:1085719/137‑1 (MQ=255)

                                                                                                                         accgtaaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTg             >  1:620061/1‑140 (MQ=255)

                                                                                                                           cgtaaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCg           <  2:1508121/140‑1 (MQ=255)

                                                                                                                            gtaaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGt          >  1:842964/1‑140 (MQ=255)

                                                                                                                             taaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTg         >  2:557172/1‑140 (MQ=255)

                                                                                                                             taaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTg         >  2:593824/1‑140 (MQ=255)

                                                                                                                             taaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTg         >  2:695861/1‑140 (MQ=255)

                                                                                                                             taaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTg         >  1:571503/1‑140 (MQ=255)

                                                                                                                              aaGATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTGa        <  1:1591854/140‑1 (MQ=255)

                                                                                                                                gATGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTGATg      <  2:842964/140‑1 (MQ=255)

                                                                                                                                  tGTCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCCGTTCCGCCAGGAGCTGCGTGATGcc    >  1:285944/1‑140 (MQ=255)

                                                                                                                                    tCAGGCATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTGATGCCGc  <  2:962734/140‑1 (MQ=255)

GTTCTGCACTTTAAAGGCTTTATCATCGACGATAGCGTACTTTATAGCGGTGCCAGCCTGAACGATGTTTACCTGCATCAGCACGATAAATATCGCTACGACCGTTATCATCTGATCCGTAACCGTAAGATGTCAGACATTATGTTTGAATGGGTTACACAGAATATTATGAATGGCCGCGGCGTTAATCGTCTGGATGATGTTAATCGGCCAAAAAGCCCGGAAATCAAGAACGATATTCGTCTGTTCCGCCAGGAGCTGCGTGATGCCGC  >  NC_000913/2723132‑2723403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A