Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,747,954 A→G intergenic (‑159/‑8) ffh ← / → ypjD signal recognition particle protein component/cytochrome c assembly family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,747,9540AG98.7% 288.6 / ‑5.2 79intergenic (‑159/‑8)ffh/ypjDsignal recognition particle protein component/cytochrome c assembly family protein
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (48/30);  total (49/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTGCGCTGGT  >  NC_000913/2747820‑2748089
                                                                                                                                      |                                                                                                                                       
gTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCa                                                                                                                                    >  1:559083/1‑140 (MQ=255)
 ttGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCAc                                                                                                                                   >  1:74077/1‑140 (MQ=255)
  tGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACt                                                                                                                                  <  2:1048173/140‑1 (MQ=255)
  tGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACt                                                                                                                                  >  1:234810/1‑140 (MQ=255)
  tGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACt                                                                                                                                  >  2:5286/1‑140 (MQ=255)
       gCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGcc                                                                                                                             <  1:993682/140‑1 (MQ=255)
         aaTCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCg                                                                                                                           <  1:1607654/140‑1 (MQ=255)
                acacATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTtgc                                                                                                                    <  1:5286/140‑1 (MQ=255)
                 cacaTCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTtgct                                                                                                                   <  2:1402523/140‑1 (MQ=255)
                       atcaGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTtgctctgctc                                                                                                             >  1:589742/1‑140 (MQ=255)
                        tcaGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTcg                                                                                                            <  1:840244/140‑1 (MQ=255)
                                 tGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCg                                                                                                   >  1:1249338/1‑140 (MQ=255)
                                   ccGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGcc                                                                                                 >  2:1610079/1‑140 (MQ=255)
                                   ccGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGcc                                                                                                 >  1:575817/1‑140 (MQ=255)
                                    cGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCtt                                                                                                       >  1:417032/1‑133 (MQ=255)
                                    cGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCtt                                                                                                       <  2:417032/133‑1 (MQ=255)
                                      cAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTAc                                                                                              >  2:1456634/1‑140 (MQ=255)
                                      cAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTAc                                                                                              <  2:1377161/140‑1 (MQ=255)
                                                 gAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCt                                                                                   >  1:1271910/1‑140 (MQ=255)
                                                   aGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTg                                                                                 >  1:1280974/1‑140 (MQ=255)
                                                     gCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTgcg                                                                               <  1:251614/140‑1 (MQ=255)
                                                        tCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTg                                                                            >  1:1472272/1‑140 (MQ=255)
                                                        tCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTg                                                                            >  1:331139/1‑140 (MQ=255)
                                                          tttGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGAt                                                                          >  2:1221428/1‑140 (MQ=255)
                                                          tttGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGAt                                                                          <  2:589742/140‑1 (MQ=255)
                                                          tttGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGAt                                                                          <  1:1456634/140‑1 (MQ=255)
                                                                   aTGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTgcg                                                                               >  2:736125/1‑126 (MQ=255)
                                                                   aTGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTgcg                                                                               <  1:736125/126‑1 (MQ=255)
                                                                   aTGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCgg                                                                 >  2:154283/1‑140 (MQ=255)
                                                                   aTGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCACCTACTCCGTCAGTCTTGCGCTGATTGTTCCCgg                                                                 >  2:1472306/1‑140 (MQ=255)
                                                                     gCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTc                                                               >  1:1039016/1‑140 (MQ=255)
                                                                      cAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTct                                                              >  2:474781/1‑140 (MQ=255)
                                                                           gTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTTAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCtgctgc                                                         >  1:153654/1‑140 (MQ=255)
                                                                           gTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCtgctgc                                                         >  2:1443208/1‑140 (MQ=255)
                                                                              ggAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGt                                                                       <  1:80026/123‑1 (MQ=255)
                                                                              ggAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGt                                                                       >  2:80026/1‑123 (MQ=255)
                                                                                     cggtCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCTGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAAcgg                                               >  2:306314/4‑140 (MQ=255)
                                                                                     cGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAAcgg                                               >  2:311679/1‑140 (MQ=255)
                                                                                     cGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAAcgg                                               >  2:1317691/1‑140 (MQ=255)
                                                                                          aCCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCt                                          >  2:54803/1‑140 (MQ=255)
                                                                                          aCCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATACCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCt                                          >  1:597513/1‑140 (MQ=255)
                                                                                               aCGCTATTCTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTggcgg                                     >  2:903443/1‑140 (MQ=255)
                                                                                               aCGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTggcgg                                     >  1:979920/1‑140 (MQ=255)
                                                                                                 gCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGgcggcg                                   <  2:1039016/140‑1 (MQ=255)
                                                                                                  cTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGgcgc                                  <  1:1317926/140‑1 (MQ=255)
                                                                                                   tataCTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCa                                 <  2:811805/140‑1 (MQ=255)
                                                                                                   tataCTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCa                                 <  2:582359/140‑1 (MQ=255)
                                                                                                    ataCTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCAt                                >  1:1520929/1‑140 (MQ=255)
                                                                                                     taCTGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATg                               <  1:1610079/140‑1 (MQ=255)
                                                                                                        tGCTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCt                            <  2:559083/140‑1 (MQ=255)
                                                                                                          cTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCa                                 >  2:1350029/1‑133 (MQ=255)
                                                                                                          cTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCa                                 <  1:1350029/133‑1 (MQ=255)
                                                                                                          cTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCtat                          >  2:1224513/1‑140 (MQ=255)
                                                                                                          cTTCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCtat                          >  2:1675300/1‑140 (MQ=255)
                                                                                                           ttCTCTTTCTTATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCtatt                         >  2:591800/1‑140 (MQ=255)
                                                                                                               ctttcttATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTAttt                     >  1:1134317/1‑140 (MQ=255)
                                                                                                                   cttATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGc                 <  1:1443208/140‑1 (MQ=255)
                                                                                                                   cttATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGc                 <  2:755043/140‑1 (MQ=255)
                                                                                                                   cttATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGc                 <  1:1317691/140‑1 (MQ=255)
                                                                                                                   cttATTGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGc                 <  2:1134317/140‑1 (MQ=255)
                                                                                                                        tGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCa            <  1:474781/140‑1 (MQ=255)
                                                                                                                        tGCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCa            >  1:1699816/1‑140 (MQ=255)
                                                                                                                        tGCTCAAACTGGCGACATCAGTAGGCCCGTTTTTGCTCTGCTCGCGCTCGTCGCCTACGCCGGCAGTCTTGTGGTGATTGTGCGCGGTCTGCTGCAAAAAAACGGCGGCAGGCGGAGCATGGCCATTATATCTACTGTCa            >  2:198526/1‑140 (MQ=255)
                                                                                                                         gCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCAt           >  1:631086/1‑140 (MQ=255)
                                                                                                                         gCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCAt           <  2:74077/140‑1 (MQ=255)
                                                                                                                         gCTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCAt           >  1:415096/1‑140 (MQ=255)
                                                                                                                          cTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCAtt          >  2:1373037/1‑140 (MQ=255)
                                                                                                                          cTCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCAtt          >  1:1380834/1‑140 (MQ=255)
                                                                                                                           tCAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTg         <  1:54803/140‑1 (MQ=255)
                                                                                                                            cAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTgc        >  1:1605684/1‑140 (MQ=255)
                                                                                                                            cAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTgc        >  2:1428322/1‑140 (MQ=255)
                                                                                                                            cAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTgc        >  1:1324399/1‑140 (MQ=255)
                                                                                                                            cAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTgc        >  1:360854/1‑140 (MQ=255)
                                                                                                                            cAAACTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTgc        >  2:1604205/1‑140 (MQ=255)
                                                                                                                            cAAACTGTAGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTgc        >  2:1313704/1‑140 (MQ=255)
                                                                                                                             aaaCTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTgcg       <  2:1380834/140‑1 (MQ=255)
                                                                                                                             aaaCTGTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTgcg       <  1:1604205/140‑1 (MQ=255)
                                                                                                                                  gTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTGCGCTGGt  >  2:1519626/1‑140 (MQ=255)
                                                                                                                                  gTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTGCGCTGGt  <  2:153654/140‑1 (MQ=255)
                                                                                                                                  gTCGGCATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTGCGCTGGt  >  2:215301/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                       
GTTGGCCGCAATCGCGACACATCATCAGTATTTTGCCGCAGTATAACATGAAGGCGTCTTTGTTGTTATGCAACGGTTGGAGCAGCGTTCACCTGACGCTATACTGCTTCTCTTTCTTATTGCTCAAACTGTCGACATCACTATGCCCGTTTTTGCTCTGCTCGCGCTTGTCGCCTACTCCGTCAGTCTTGCGCTGATTGTTCCCGGTCTGCTGCAAAAAAACGGCGGCTGGCGGCGCATGGCTATTATTTCTGCGGTCATTGCGCTGGT  >  NC_000913/2747820‑2748089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A