Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,342,107 (G)6→7 coding (842/987 nt) kdsD → D‑arabinose 5‑phosphate isomerase KdsD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,342,1011.G100.0% 231.7 / NA 62P279R (CCG→CGG) kdsDD‑arabinose 5‑phosphate isomerase KdsD
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (49/13);  total (49/13)

ACCCGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCATGAT  >  NC_000913/3341962‑3342228
                                                                                                                                             |                                                                                                                                   
aCCCGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGc‑c                                                                                                                                      >  2:1646952/1‑140 (MQ=255)
  ccGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gg                                                                                                                                  >  2:1327966/1‑140 (MQ=255)
  ccGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gg                                                                                                                                  <  1:1340232/140‑1 (MQ=255)
   cGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑ggg                                                                                                                                 >  1:1444759/1‑140 (MQ=255)
    gCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gggg                                                                                                                                <  2:1235025/140‑1 (MQ=255)
    gCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gggg                                                                                                                                <  1:1657075/140‑1 (MQ=255)
    gCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gggg                                                                                                                                <  1:1424906/140‑1 (MQ=255)
    gCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gggg                                                                                                                                <  1:1120858/140‑1 (MQ=255)
     cAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑ggggg                                                                                                                               >  1:1593639/1‑140 (MQ=255)
     cAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑ggggg                                                                                                                               >  2:329450/1‑140 (MQ=255)
        aaaTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACAC‑C‑‑ggggggga                                                                                                                            >  1:1145643/1‑138 (MQ=255)
         aaTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gggggggaa                                                                                                                           <  1:1327966/140‑4 (MQ=255)
         aaTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gggggggaa                                                                                                                           <  1:82159/140‑4 (MQ=255)
          aTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gggggggaat                                                                                                                          <  1:34802/140‑5 (MQ=255)
          aTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑gggggggaat                                                                                                                          <  1:487555/140‑5 (MQ=255)
            cTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TAc                                                                                                                      <  2:88400/140‑1 (MQ=255)
                    gACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTgcgc                                                                                                              <  1:44901/140‑1 (MQ=255)
                     aCTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACgtgt                                                                                                                  <  2:223061/135‑1 (MQ=255)
                     aCTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACgtgt                                                                                                                  >  1:223061/1‑135 (MQ=255)
                     aCTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTCCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGcc                                                                                                             >  2:652701/1‑140 (MQ=255)
                        gTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTg                                                                                                          <  2:1056990/140‑1 (MQ=255)
                          cATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATG‑TCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCa                                                                                                       >  1:556540/1‑140 (MQ=255)
                           aTTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCa                                                                                                       >  1:1264049/1‑140 (MQ=255)
                               gCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCt                                                                                                   >  2:585729/1‑140 (MQ=255)
                                cGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTg                                                                                                  >  1:475426/1‑140 (MQ=255)
                                       aaTATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTg                                                                                           <  2:1453063/140‑1 (MQ=255)
                                       aaTATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTg                                                                                           <  2:516221/140‑1 (MQ=255)
                                              tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt                                                                                    <  2:1444759/140‑1 (MQ=255)
                                              tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt                                                                                    <  2:1548698/140‑1 (MQ=255)
                                              tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt                                                                                    <  1:329450/140‑1 (MQ=255)
                                              tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCATGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt                                                                                    <  2:1492328/140‑1 (MQ=255)
                                               gatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTg                                                                                   >  1:1588298/1‑140 (MQ=255)
                                                atTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGa                                                                                  >  1:1430281/1‑140 (MQ=255)
                                                 ttGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGaa                                                                                 >  2:1278893/1‑140 (MQ=255)
                                                 ttGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGaa                                                                                 >  1:1072632/1‑140 (MQ=255)
                                                   gAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACt                                                                               <  2:436265/140‑1 (MQ=255)
                                                   gAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACt                                                                               >  1:859854/1‑140 (MQ=255)
                                                     aGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTa                                                                             >  1:1648889/1‑140 (MQ=255)
                                                         aTCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGc                                                                         >  1:403707/1‑140 (MQ=255)
                                                         aTCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGc                                                                         >  2:1322287/1‑140 (MQ=255)
                                                         aTCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGc                                                                         >  1:1617674/1‑140 (MQ=255)
                                                          tCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCa                                                                        <  2:1593639/140‑1 (MQ=255)
                                                              tACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTcc                                                                    >  1:906524/1‑140 (MQ=255)
                                                               aCCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTccc                                                                   <  1:652701/140‑1 (MQ=255)
                                                                  gACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGcc                                                                >  1:630318/1‑140 (MQ=255)
                                                                   aCGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCa                                                               >  1:1509670/1‑140 (MQ=255)
                                                                     ggTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCata                                                             >  1:224947/1‑140 (MQ=255)
                                                                     ggTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCata                                                             >  1:777736/1‑140 (MQ=255)
                                                                      gtgtTTTCCGCCGTTTTTTGGATAGGGGGGTGGTTGTTCGTCAGTTAAGTATTGCCGTTGTGATGCCGC‑G‑‑GGGGGGA‑AA‑TACGTGTGCGCCCTGGCTTTCTGGCCGTGGGGGCATTAAATTAAATGCAGTCCCGCCatat                                                            <  2:1588298/140‑1 (MQ=255)
                                                                      gtgtTTTCCGCCGTGTTTTCAATAGGGGCGGGGATGTTCGTCAGTTAAGTATTGCCGTTGTGATGCCGCGG‑‑GGGGGG‑‑AA‑TACGTGTGCGCCCGGGCTTTCTGGCCGTTGAGGCACTGAACTTAAGGCATTCCCGCCatat                                                            <  2:475426/140‑1 (MQ=255)
                                                                      gTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCatat                                                            >  1:586073/1‑140 (MQ=255)
                                                                         ttttACGCTTTTTTTTGGATGTGGGTGTGGATTTTCGTCATTAAGGTTTTGCGGATGTGATGCCGG‑G‑‑GGGGGGA‑AA‑TACGTGTCCGCCCTGCCATTCTGGCCGTTGAGGCACTGATCTAAATGCGCTCCCGCCATATCAc                                                         <  2:906524/139‑1 (MQ=255)
                                                                                 cGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGa                                                 >  1:1517024/1‑140 (MQ=255)
                                                                                 cGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGa                                                 >  1:117585/1‑140 (MQ=255)
                                                                                 cGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGa                                                 >  2:542458/1‑140 (MQ=255)
                                                                                   tgtCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CGGGGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGAt                                                >  1:1359195/1‑140 (MQ=255)
                                                                                   tgtCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATg                                               >  1:1032490/1‑140 (MQ=255)
                                                                                   tgtCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATg                                               >  1:1647047/1‑140 (MQ=255)
                                                                                   tgtCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATg                                               >  2:638790/1‑140 (MQ=255)
                                                                                     tCTTCGATAGGGGGGTGGTTTTTCGTCATTTAATTATTGCGGATGTGAGGCCGC‑G‑‑GGGGGGA‑AA‑TACGTGTGCCCCCTGGCTTTCGGGCCGTGGAGGCACTGAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGt                                             <  2:1032490/140‑1 (MQ=255)
                                                                                             atGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATAGTTGCCGATg                                     >  2:75918/1‑140 (MQ=255)
                                                                                              tGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATgg                                    >  1:84934/1‑140 (MQ=255)
                                                                                               gggCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGc                                   >  1:1478207/1‑140 (MQ=255)
                                                                                               gggCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGc                                   >  2:1656782/1‑140 (MQ=255)
                                                                                                ggggTGGTTGTTCGTAAGTTAATTTTTGCGGTTGTGAGGCCGC‑G‑‑GGGGGGA‑AA‑TAGGTGTGCGCCCTGGCTTTCTGGCCGTGGGGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCg                                  <  2:1430281/137‑1 (MQ=255)
                                                                                                ggCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCg                                  >  1:494222/1‑140 (MQ=255)
                                                                                                    tGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCa                              >  1:1248114/1‑140 (MQ=255)
                                                                                                      gATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCTATATCACCTCCGTGATGGTTGCCGATGGCGACCAtt                            >  2:365502/1‑140 (MQ=255)
                                                                                                      gATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCAtt                            >  1:1697817/1‑140 (MQ=255)
                                                                                                          ttgttCAGTTAAGTTTTGCGGTTGTGAGGGCGC‑G‑‑GGGGGGA‑AA‑TGCGTGTGCCCCTTGGCTTTCTGGCCGTGGGGGCACTGAATTTAATGCATTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACt                        <  2:84934/136‑1 (MQ=255)
                                                                                                          ttCGTCATTTAAGTATTGCCGATGTGATGCCGCGG‑‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCTTTCTGGCCGTTGAGGCACTGAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACt                        <  2:1617674/140‑1 (MQ=255)
                                                                                                           tCGTCATTTAAGTTTTGCGGTTGTGGTGCCGC‑G‑‑GGGGGGA‑AA‑TCCGTGTGCCCCCTGGCTTTCGGCCCGTTGAGGCACTAAACTTAATGCATTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTc                       <  2:859854/140‑1 (MQ=255)
                                                                                                           tCGTCAGTTAAGTTTTGCGGATGTGATGCGGCGG‑‑GGGGGG‑‑AA‑TACGGGTGCGCCGTGTCTTTCGGGCCGTGGAGGCACTAAATTTAATGCATTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTc                       <  2:224947/140‑1 (MQ=255)
                                                                                                           tCGTCAGTTAAGTATTGCCGTTGTGAGGCCGCGG‑‑GGGGGG‑‑AA‑TGCGTGTGCCCCCTGGCTTTCTGGCCGTGGAGGCACTGAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTc                       <  2:556540/140‑1 (MQ=255)
                                                                                                           tCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTc                       >  2:1680265/1‑140 (MQ=255)
                                                                                                           tCGTCAGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTc                       >  1:314564/1‑140 (MQ=255)
                                                                                                            cGTCATTTAAGTTTTGCCGATGTGATGACGCGG‑‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCTTTCTGGCCGTGGAGGCACTGAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCg                      <  2:494222/140‑1 (MQ=255)
                                                                                                            cGTCAGTTAATTTTTGCGGATGTGAGGCCGG‑G‑‑GGGGGGA‑AA‑TGCGTGGGCCCCTTGCCTTTCGGGCGGTGGGGGCACTAAATTTAATGCAGCCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCg                      <  2:1254620/140‑1 (MQ=255)
                                                                                                            cGTCAGTTAAGTTTTGCCGATGTGAGGCCGCGG‑‑GGGGGG‑‑AA‑TGCGTGTGCGCCCGGGCTTTCTGGCCGTTGAGGCACTGAATTAAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCg                      <  2:444905/140‑1 (MQ=255)
                                                                                                             gTCAGTTAAGTATTGCCGATGTGATGCCGC‑G‑‑GGGGGGGAAA‑TACGTGTGCCCCCTGGCATTCTGGCCGTTGAGGCACTAAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCg                      <  2:1359195/140‑1 (MQ=255)
                                                                                                              ttattaaaGTATTGCGGTTGTGAGGCGGC‑G‑‑GGGGGGA‑AA‑TCCGTGGGCCCCCTGGCTTTCGGGCCGTGGGGGCACTAAATTTAATGCATTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgt                    <  2:117585/134‑1 (MQ=255)
                                                                                                              taaGTTAATTATGGCCGATGTGAGGCCGCGG‑‑GGGGGG‑‑AA‑TCCGTGTGCGCCCGGGCATTCGGGCGGTGGAGGCACTAAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgt                    <  2:799560/138‑1 (MQ=255)
                                                                                                                atttAAGTTTGGCGGATGTGAGGACGCGG‑‑GGGGGG‑‑AA‑TGGGGGGGCGCCCTGGCTTTCGGGCCGTGGGGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgtgt                  <  2:1381126/138‑1 (MQ=255)
                                                                                                                aGTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgtgt                  >  1:799560/1‑140 (MQ=255)
                                                                                                                 tttAAGTTTTGCGGTTGTGATGCCGG‑G‑‑GGGGGG‑‑AATTAGGTGGGCGCCCTGTCTTTCGGGCGGTGGAGGCACTGAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgtgtg                 <  2:1697817/139‑1 (MQ=255)
                                                                                                                 gTTAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgtgtg                 >  1:1531234/1‑140 (MQ=255)
                                                                                                                  ttAAGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgtgtgt                >  1:1381126/1‑140 (MQ=255)
                                                                                                                     aGTATTGCCGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTAc             >  1:1312778/1‑140 (MQ=255)
                                                                                                                     aGTATTGCCGATGTGAGGGCGCGG‑‑GGGGGG‑‑AA‑TCCGTGTGCGCCCTGGCATTCGGGCCGTTGAGGCACTGAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTAc             <  2:1525956/140‑1 (MQ=255)
                                                                                                                      ttATTGCGGAGGTGATGCCGC‑G‑‑GGGGGGA‑AA‑TACGTGTGCGCCCTGGCTTTCTGGCGGTGGAGGCACTAAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACa            <  2:1647047/139‑1 (MQ=255)
                                                                                                                            ccGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACatactgt      >  1:1190752/1‑136 (MQ=255)
                                                                                                                            ccGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCa      >  1:406995/1‑140 (MQ=255)
                                                                                                                            ccGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCa      >  2:1399071/1‑140 (MQ=255)
                                                                                                                            ccGATGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCa      >  1:965718/1‑140 (MQ=255)
                                                                                                                               aTGTGATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCATGa   >  2:1392156/1‑140 (MQ=255)
                                                                                                                                tgtgATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCATGAt  >  2:702474/1‑140 (MQ=255)
                                                                                                                                tgtgATGACGC‑CG‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCATGAt  >  2:1326553/1‑140 (MQ=255)
                                                                                                                                             |                                                                                                                                   
ACCCGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC‑C‑‑GGGGGG‑‑AA‑TACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCATGAT  >  NC_000913/3341962‑3342228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A