Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,410,337	A→G	I20V (ATT→GTT)	dusB →	tRNA‑dihydrouridine synthase B

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,410,337	0	A	G	100.0%	412.0 / NA	110	I20V (ATT→GTT)	dusB	tRNA‑dihydrouridine synthase B
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (54/56); total (54/56)

Only 100 of 110 total aligned reads displayed.

AGTTTGGCCTTTCATCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATTGATGAACCC  >  NC_000913/3410203‑3410471

aGTTTGGCCTTTCATCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTaca                                                                                                                                   >  1:1226500/1‑140 (MQ=255)

     ggCCTTTCATCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGTGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTacagacag                                                                                                                              >  1:418701/1‑140 (MQ=255)

                 cGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGAc                                                                                                                  <  1:1063951/140‑1 (MQ=255)

                  gTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACg                                                                                                                 <  2:301418/140‑1 (MQ=255)

                  gTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACg                                                                                                                 >  1:844732/1‑140 (MQ=255)

                   tGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGt                                                                                                                <  1:1489039/140‑1 (MQ=255)

                   tGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGt                                                                                                                <  2:1065340/140‑1 (MQ=255)

                     cAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTtg                                                                                                              >  1:978243/1‑140 (MQ=255)

                             gCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACga                                                                                                      >  1:1172265/1‑140 (MQ=255)

                                tAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGAt                                                                                                   <  1:547968/140‑1 (MQ=255)

                                      aCGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGc                                                                                             >  2:838662/1‑140 (MQ=255)

                                         ccgccTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCgg                                                                                          >  2:454510/1‑140 (MQ=255)

                                         ccgccTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCgg                                                                                          >  2:1395004/1‑140 (MQ=255)

                                          cgccTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGa                                                                                         <  1:1395004/140‑1 (MQ=255)

                                          cgccTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGa                                                                                         >  1:1559798/1‑140 (MQ=255)

                                            ccTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGAtt                                                                                       <  2:1079274/140‑1 (MQ=255)

                                             cTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGc                                                                                             >  1:1684166/1‑133 (MQ=255)

                                             cTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGc                                                                                             <  2:1684166/133‑1 (MQ=255)

                                             cTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTg                                                                                      >  2:975710/1‑140 (MQ=255)

                                             cTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTg                                                                                      >  2:774793/1‑140 (MQ=255)

                                             cTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTg                                                                                      >  2:219267/1‑140 (MQ=255)

                                             cTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTg                                                                                      >  2:1469155/1‑140 (MQ=255)

                                             cTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCAGATTg                                                                                      >  1:508734/1‑140 (MQ=255)

                                               tGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGAc                                                                                    >  1:1375499/1‑140 (MQ=255)

                                                gCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACa                                                                                   <  2:1172265/140‑1 (MQ=255)

                                                 cAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAg                                                                                  >  1:1078105/1‑140 (MQ=255)

                                                      acaGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACa                                                                                   >  2:194554/1‑134 (MQ=255)

                                                      acaGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACa                                                                                   <  1:194554/134‑1 (MQ=255)

                                                      acaGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATcc                                                                             >  2:578138/1‑140 (MQ=255)

                                                           aTGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAgat                                                                        >  2:1564035/1‑140 (MQ=255)

                                                            tGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAgatg                                                                       <  1:1204555/140‑1 (MQ=255)

                                                             ggTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAgatga                                                                      >  2:622322/1‑140 (MQ=255)

                                                              gTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAgatgat                                                                     <  2:1231091/140‑1 (MQ=255)

                                                              gTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAgatgat                                                                     <  1:578138/140‑1 (MQ=255)

                                                              gTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAgatgat                                                                     <  1:1023786/140‑1 (MQ=255)

                                                              gTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAgatgat                                                                     >  2:758769/1‑140 (MQ=255)

                                                               tCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGatgatg                                                                    <  2:1461610/140‑1 (MQ=255)

                                                                  tttCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGtct                                                                 >  2:1485648/1‑140 (MQ=255)

                                                                    tCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGtcttc                                                               <  2:1163269/140‑1 (MQ=255)

                                                                    tCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGtcttc                                                               <  1:838662/140‑1 (MQ=255)

                                                                      ttAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTa                                                             <  2:1062284/140‑1 (MQ=255)

                                                                      ttAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTa                                                             <  1:774793/140‑1 (MQ=255)

                                                                        aaCTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAAc                                                           >  2:1040417/1‑140 (MQ=255)

                                                                          cTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAAccc                                                         <  1:975710/140‑1 (MQ=255)

                                                                           tCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCca                                                        <  2:1559798/140‑1 (MQ=255)

                                                                           tCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCca                                                        <  1:390352/140‑1 (MQ=255)

                                                                           tCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCca                                                        <  2:117664/140‑1 (MQ=255)

                                                                             aTGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGTGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCcaca                                                      >  2:1362188/1‑140 (MQ=255)

                                                                             aTGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGatgatg                                                                    >  1:1294973/1‑126 (MQ=255)

                                                                             aTGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCcata                                                      >  2:304686/1‑138 (MQ=255)

                                                                             aTGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCcaca                                                      >  1:1584729/1‑140 (MQ=255)

                                                                             aTGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCcac                                                       >  1:1588949/1‑139 (MQ=255)

                                                                             aTGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCcac                                                       <  2:1588949/139‑1 (MQ=255)

                                                                             aTGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCca                                                        <  1:447800/138‑1 (MQ=255)

                                                                             aTGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCca                                                        >  2:447800/1‑138 (MQ=255)

                                                                              tGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAg                                                     >  2:1066345/1‑140 (MQ=255)

                                                                               gcgcATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCca                                                        >  2:334748/1‑136 (MQ=255)

                                                                               gcgcATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCca                                                        <  1:334748/136‑1 (MQ=255)

                                                                               gcgcATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAgg                                                    >  1:678586/1‑140 (MQ=255)

                                                                                    tCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTgg                                               >  1:1108604/1‑140 (MQ=255)

                                                                                       gACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGaa                                            >  1:877847/1‑140 (MQ=255)

                                                                                       gACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAAGTTTGGGaa                                            >  2:672145/1‑140 (MQ=255)

                                                                                            tatCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGa                                       <  2:877847/140‑1 (MQ=255)

                                                                                             atCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGAc                                      >  2:1222804/1‑140 (MQ=255)

                                                                                              tCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACa                                     >  1:740156/1‑140 (MQ=255)

                                                                                               cAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGa                                             >  2:836530/1‑131 (MQ=255)

                                                                                               cAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGa                                             <  1:836530/131‑1 (MQ=255)

                                                                                               cAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACaa                                    <  1:45342/140‑1 (MQ=255)

                                                                                               cAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACaa                                    >  1:307839/1‑140 (MQ=255)

                                                                                               cAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACaa                                    >  2:966229/1‑140 (MQ=255)

                                                                                                  cTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACGGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAAtc                                 <  1:1485648/140‑1 (MQ=255)

                                                                                                  cTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAAtc                                 >  1:233400/1‑140 (MQ=255)

                                                                                                  cTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAAtc                                 >  1:1168401/1‑140 (MQ=255)

                                                                                                  cTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAAtc                                 >  1:537697/1‑140 (MQ=255)

                                                                                                  cTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAAtc                                 >  1:765989/1‑140 (MQ=255)

                                                                                                     aGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCg                              <  1:219267/140‑1 (MQ=255)

                                                                                                     aGAAATCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCg                              <  1:711798/140‑1 (MQ=255)

                                                                                                       aaaTCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGtt                            >  1:494853/1‑140 (MQ=255)

                                                                                                          tCGCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGTGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTAc                         <  1:1362188/140‑1 (MQ=255)

                                                                                                            gCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACgg                       <  1:991925/140‑1 (MQ=255)

                                                                                                            gCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACgg                       <  2:1301234/140‑1 (MQ=255)

                                                                                                            gCCTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACgg                       <  2:494853/140‑1 (MQ=255)

                                                                                                             ccTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGa                      <  2:294750/140‑1 (MQ=255)

                                                                                                              cTGATCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGAt                     <  2:978243/140‑1 (MQ=255)

                                                                                                                 aTCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGt                  <  2:489153/140‑1 (MQ=255)

                                                                                                                  tCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTg                 <  2:307839/140‑1 (MQ=255)

                                                                                                                  tCGCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTg                 <  1:1066345/140‑1 (MQ=255)

                                                                                                                    gCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGca               <  1:1469155/140‑1 (MQ=255)

                                                                                                                    gCAGCGCCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGca               <  1:347897/140‑1 (MQ=255)

                                                                                                                      accgcCCATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGcaca             <  2:1584729/138‑1 (MQ=255)

                                                                                                                          cccATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGa                      >  2:859236/1‑127 (MQ=255)

                                                                                                                          cccATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGa                      <  1:859236/127‑1 (MQ=255)

                                                                                                                          cccATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATtga         <  2:233400/140‑1 (MQ=255)

                                                                                                                           ccATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATtgat        >  1:595953/1‑140 (MQ=255)

                                                                                                                            cATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATtgatg       <  2:678586/140‑1 (MQ=255)

                                                                                                                            cATGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATtgatg       <  2:740156/140‑1 (MQ=255)

                                                                                                                             aTGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATtgatga      >  1:524183/1‑140 (MQ=255)

                                                                                                                             aTGGCTGGCGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATtgatga      >  2:253980/1‑140 (MQ=255)

                                                                                                                                 ctggcGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATTGATGAAccc  <  2:470787/140‑1 (MQ=255)

                                                                                                                                 ctggcGTTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCAGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATTGATGAAccc  <  2:508734/140‑1 (MQ=255)

AGTTTGGCCTTTCATCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTACAGACAGACCTTTTCGGACGTTGTGCTACGAGATGGGAGCCGGATTGACAGTATCCGAGATGATGTCTTCTAACCCACAGGTTTGGGAAAGCGACAAATCTCGTTTACGGATGGTGCACATTGATGAACCC  >  NC_000913/3410203‑3410471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A