Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
183 |
98.6 |
3427438 |
96.9% |
3321187 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,462,844 |
(G)6→5 |
coding (501/588 nt) |
gspJ → |
Type II secretion system protein GspJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,462,839 | 0 | G | . | 100.0%
| 533.5
/ NA
| 123 | coding (496/588 nt) | gspJ | Type II secretion system protein GspJ |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (51/72); total (51/72) |
Only 100 of 131 total aligned reads displayed.
ACTTCTGTGGATGGCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATATGGGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTA > NC_000913/3462701‑3462971
|
aCTTCTGTGGATGGCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATATgg > 1:1405589/1‑140 (MQ=255)
aCTTCTGTGGATGGCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATATgg > 2:704126/1‑140 (MQ=255)
tCTGTGGATGGCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGGGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATATggggg > 1:1544662/1‑140 (MQ=255)
tgtgGATGGCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATATgggggtt > 1:1638413/1‑138 (MQ=255)
tgtgGATGGCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATATgggggtt > 2:1335907/1‑138 (MQ=255)
gtgGATGGCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATATgggggtta < 2:23029/140‑4 (MQ=255)
tGGCAGGAAGGATCAGCCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAgcg < 1:1338202/140‑1 (MQ=255)
ggCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAgcgc > 2:1013178/1‑140 (MQ=255)
aggaaggaTCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGt < 2:765765/140‑1 (MQ=255)
aggaaggaTCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGt < 2:732239/140‑1 (MQ=255)
aggaaggaTCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGt < 2:1474551/140‑1 (MQ=255)
aggaaggaTCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGt < 1:234042/140‑1 (MQ=255)
aTCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCAt < 2:817203/140‑1 (MQ=255)
aTCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCAt > 1:1085824/1‑140 (MQ=255)
aTCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCAt < 2:425808/140‑1 (MQ=255)
cccGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGc < 2:573068/133‑1 (MQ=255)
ccGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTg < 2:92272/140‑1 (MQ=255)
gCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAg < 2:1085824/140‑1 (MQ=255)
gCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAg < 1:704126/140‑1 (MQ=255)
gCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAg < 1:105179/140‑1 (MQ=255)
cccAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAg > 1:932129/1‑139 (MQ=255)
cccAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGc > 1:892628/1‑140 (MQ=255)
ggCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGTGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGtt < 1:1597563/140‑1 (MQ=255)
ggCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGtt < 1:1467923/140‑1 (MQ=255)
gCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTg > 2:533730/1‑132 (MQ=255)
gCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTg < 1:533730/132‑1 (MQ=255)
tGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCga > 1:1409539/1‑140 (MQ=255)
gCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCga‑g > 1:905024/1‑140 (MQ=255)
gAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑Gagaa < 2:576264/140‑1 (MQ=255)
aaCATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑Gagaag > 1:939349/1‑140 (MQ=255)
aTGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGt > 2:599803/1‑140 (MQ=255)
tGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑Gagaaga > 1:897483/1‑137 (MQ=255)
tGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTc > 2:1289404/1‑140 (MQ=255)
tGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTc > 2:78527/1‑140 (MQ=255)
tGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTc > 2:1310820/1‑140 (MQ=255)
gTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAg < 2:1283693/126‑1 (MQ=255)
tCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGc < 2:781892/140‑1 (MQ=255)
tCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGc < 2:557303/140‑1 (MQ=255)
tCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGc < 2:747452/140‑1 (MQ=255)
tCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGc > 1:497152/1‑140 (MQ=255)
agCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCt < 2:993452/140‑1 (MQ=255)
tcttctGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGAc > 2:1445328/1‑140 (MQ=255)
tcttctGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGAc > 2:716929/1‑140 (MQ=255)
cttctGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACg < 2:470359/140‑1 (MQ=255)
cttctGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACg < 1:413447/140‑1 (MQ=255)
cttctGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACg < 2:1205389/140‑1 (MQ=255)
tctGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCAGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCt < 2:87589/132‑1 (MQ=255)
ggAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGc < 2:905024/140‑1 (MQ=255)
gAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGcc > 2:332093/1‑140 (MQ=255)
gAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGcc < 1:649372/140‑1 (MQ=255)
aaaGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCg < 2:14804/140‑1 (MQ=255)
cAGCGGGGGAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGaataa < 1:1265739/140‑1 (MQ=255)
cAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGaataa < 2:256222/140‑1 (MQ=255)
gCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAataata < 2:939349/140‑1 (MQ=255)
gCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAataata < 1:1310820/140‑1 (MQ=255)
gCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAataata < 1:599803/140‑1 (MQ=255)
gCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAataata < 1:78527/140‑1 (MQ=255)
cGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCg < 1:937326/130‑1 (MQ=255)
cGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCg > 2:937326/1‑130 (MQ=255)
ggggAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAAc < 1:1087035/140‑1 (MQ=255)
gggAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAAcc > 2:185069/1‑140 (MQ=255)
gggAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAAc < 1:491345/139‑1 (MQ=255)
gAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCAt < 1:1295718/140‑1 (MQ=255)
gAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCAt < 1:469370/140‑1 (MQ=255)
gAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCAt < 2:892628/140‑1 (MQ=255)
aaGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGa < 1:1289404/140‑1 (MQ=255)
aaCTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGaa < 1:716929/140‑1 (MQ=255)
aaCTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGaa < 1:332093/140‑1 (MQ=255)
aGTCACGTTACATCTGCAGACTCAGCAATAT‑GTTGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTACCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTcg > 2:1012980/1‑140 (MQ=255)
aGTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCAGGAATAATAACCATGAATAATGaa > 2:230754/1‑127 (MQ=255)
gTCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTcgc < 2:242074/140‑1 (MQ=255)
tCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTcgcg < 1:615113/140‑1 (MQ=255)
tCACGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACAATGAATAATGAACAACGCGGCGTcgcg < 1:789250/140‑1 (MQ=255)
aCGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCgct < 1:1013178/140‑1 (MQ=255)
cGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCgctg < 1:999378/140‑1 (MQ=255)
cGTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCgctg < 1:1335907/140‑1 (MQ=255)
gTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACgcggcg < 2:379401/131‑1 (MQ=255)
gTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACgcggcg > 1:379401/1‑131 (MQ=255)
gTTACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCgctgc < 2:1560064/140‑1 (MQ=255)
ttACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCgctgct < 2:1139283/140‑1 (MQ=255)
ttACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCgctgct < 1:1203972/140‑1 (MQ=255)
ttACATCTGCAGACTCAGCAATAT‑‑GGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTc > 1:60222/1‑140 (MQ=255)
tACATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTc > 1:651898/1‑140 (MQ=255)
aCATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAAAAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCa < 1:732453/140‑1 (MQ=255)
cATCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCAt > 1:8319/1‑140 (MQ=255)
tCTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTg > 2:1333434/1‑140 (MQ=255)
cTGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGt < 2:1638413/140‑1 (MQ=255)
tGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTa < 1:1483494/140‑1 (MQ=255)
tGCAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTa > 1:910388/1‑140 (MQ=255)
cAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTg > 2:92958/1‑136 (MQ=255)
cAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACt > 2:1334293/1‑140 (MQ=255)
cAGACTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACt < 1:564320/140‑1 (MQ=255)
cTCAGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATg > 1:635171/1‑140 (MQ=255)
ggCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGAGGAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCAtt > 1:415032/2‑129 (MQ=255)
ggCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGAGGAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCAtt < 2:415032/128‑1 (MQ=255)
aGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCgctgct > 2:1190205/1‑124 (MQ=255)
aGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCgctgct < 1:1190205/124‑1 (MQ=255)
aGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCa < 2:1608121/126‑1 (MQ=255)
aGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCa > 1:1608121/1‑126 (MQ=255)
aGCAATAT‑GGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTa > 2:523055/1‑140 (MQ=255)
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ACTTCTGTGGATGGCAGGAAGGATCAACCCGCCCAGGCGATGCTGGAACATGTCGAGAGCTTTCTTCTGGAAAGTAACAGCGGGGAAAGCCAGGAACTTCCTCTCTCAGTCACGTTACATCTGCAGACTCAGCAATATGGGGGGTTACAGCGCCGTTTTGCATTACCTGAGCAGTTAGCGA‑GAGAAGAGTCGCCAGCTCAGACGCAGGCCGGGAATAATAACCATGAATAATGAACAACGCGGCGTCGCGCTGCTCATTGTACTCATGTTA > NC_000913/3462701‑3462971
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
