Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,505,976	(G)_5→6	coding (690/1119 nt)	yjhC →	KpLE2 phage‑like element; putative oxidoreductase YjhC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,505,971	1	.	G	99.0%	358.3 / ‑3.6	96	coding (685/1119 nt)	yjhC	KpLE2 phage‑like element; putative oxidoreductase YjhC
Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (44/51); total (44/52)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01

Only 100 of 112 total aligned reads displayed.

TTTACTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑GGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAA  >  NC_000913/4505835‑4506105

tttACTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑ggg                                                                                                                                     <  1:428233/140‑1 (MQ=255)

 ttACTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggg                                                                                                                                    >  1:584797/1‑140 (MQ=255)

 ttACTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggg                                                                                                                                    >  1:714593/1‑140 (MQ=255)

 ttACTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggg                                                                                                                                    >  2:746011/1‑140 (MQ=255)

 ttACTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggg                                                                                                                                    >  1:1480136/1‑140 (MQ=255)

  tACTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑ggggg                                                                                                                                   <  1:1179175/140‑1 (MQ=255)

   aCTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggggg                                                                                                                                  >  2:1650961/1‑139 (MQ=255)

    cTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggggga                                                                                                                                 <  1:1650961/140‑3 (MQ=255)

    cTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggggga                                                                                                                                 <  2:1338128/140‑3 (MQ=255)

    cTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggggga                                                                                                                                 <  1:1250987/140‑3 (MQ=255)

    cTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTACGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑gggggga                                                                                                                                 <  2:56948/140‑3 (MQ=255)

     ttGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑ggggggag                                                                                                                                <  1:1041607/140‑4 (MQ=255)

              tACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTaa                                                                                                                        <  1:262785/140‑1 (MQ=255)

                  agagACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑‑GGGGAGTGCATTTAACTGGcc                                                                                                                  <  1:237825/140‑1 (MQ=255)

                   gagaCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGc                                                                                                                   <  1:467128/140‑1 (MQ=255)

                   gagaCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGc                                                                                                                   >  2:1383153/1‑140 (MQ=255)

                    agaCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGcc                                                                                                                  <  1:936296/140‑1 (MQ=255)

                     gaCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCg                                                                                                                 <  1:1400631/140‑1 (MQ=255)

                     gaCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCg                                                                                                                 <  2:761653/140‑1 (MQ=255)

                      aCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCgg                                                                                                                <  2:1480136/140‑1 (MQ=255)

                      aCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCgg                                                                                                                <  2:1430662/140‑1 (MQ=255)

                      aCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCgg                                                                                                                <  1:1530256/140‑1 (MQ=255)

                      aCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCgg                                                                                                                <  1:282119/140‑1 (MQ=255)

                      aCGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCgg                                                                                                                >  1:1404946/1‑140 (MQ=255)

                        ggTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGaa                                                                                                              >  2:1037295/1‑140 (MQ=255)

                         gTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAAc                                                                                                             >  1:710779/1‑140 (MQ=255)

                         gTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAAc                                                                                                             >  2:797294/1‑140 (MQ=255)

                           tACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACAt                                                                                                           >  1:931678/1‑140 (MQ=255)

                           tACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACAt                                                                                                           >  1:334257/1‑140 (MQ=255)

                              tATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTAt                                                                                                        >  2:1659784/1‑140 (MQ=255)

                                tGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGt                                                                                                      >  2:328894/1‑140 (MQ=255)

                                tGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGt                                                                                                      >  2:1118454/1‑140 (MQ=255)

                                tGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGt                                                                                                      <  1:122144/140‑1 (MQ=255)

                                  aTTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtca                                                                                                    >  1:259014/1‑140 (MQ=255)

                                  aTTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtca                                                                                                    >  2:419497/1‑140 (MQ=255)

                                  aTTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtca                                                                                                    >  1:471768/1‑140 (MQ=255)

                                    tggtggAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtcatc                                                                                                  <  2:767604/140‑1 (MQ=255)

                                    tggtggAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtcatc                                                                                                  >  2:298039/1‑140 (MQ=255)

                                    tggtggAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtcatc                                                                                                  >  1:1525215/1‑140 (MQ=255)

                                    tggtggAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtcatc                                                                                                  >  1:488035/1‑140 (MQ=255)

                                     ggtggAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtcatca                                                                                                 <  1:1037295/140‑1 (MQ=255)

                                     ggtggAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGtcatca                                                                                                 >  1:650910/1‑140 (MQ=255)

                                         gAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCaa                                                                                             <  1:927700/140‑1 (MQ=255)

                                         gAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCaa                                                                                             <  1:797294/140‑1 (MQ=255)

                                         gAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCaa                                                                                             <  1:1122433/140‑1 (MQ=255)

                                         gAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCaa                                                                                             <  1:1556523/140‑1 (MQ=255)

                                          aaaTTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAAt                                                                                            <  2:710779/140‑1 (MQ=255)

                                          aaaTTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAAt                                                                                            >  1:476400/1‑140 (MQ=255)

                                          aaaTTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAAt                                                                                            <  2:1658191/140‑1 (MQ=255)

                                          aaaTTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAAt                                                                                            <  2:650910/140‑1 (MQ=255)

                                                ggCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACt                                                                                      <  1:1383153/140‑1 (MQ=255)

                                                     aTTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAgg                                                                                 <  2:1525215/140‑1 (MQ=255)

                                                      ttCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGc                                                                                <  1:1118454/140‑1 (MQ=255)

                                                      ttCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGc                                                                                <  1:1398913/140‑1 (MQ=255)

                                                      ttCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGc                                                                                <  1:298039/140‑1 (MQ=255)

                                                      ttCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGc                                                                                <  1:328894/140‑1 (MQ=255)

                                                       tCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGct                                                                               <  2:714593/140‑1 (MQ=255)

                                                         tGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGctct                                                                             <  1:1639253/140‑1 (MQ=255)

                                                                ggATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTaaaa                                                                      >  1:265350/1‑140 (MQ=255)

                                                                ggATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTaaaa                                                                      >  2:33032/1‑140 (MQ=255)

                                                                     tGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGat                                                                 <  1:478567/140‑1 (MQ=255)

                                                                     tGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGat                                                                 <  2:1308529/140‑1 (MQ=255)

                                                                     tGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGat                                                                 <  1:884128/140‑1 (MQ=255)

                                                                      ggCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAgg                                                                                 >  2:1641724/1‑123 (MQ=255)

                                                                      ggCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAgg                                                                                 <  1:1641724/123‑1 (MQ=255)

                                                                             aaGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGa                                                         <  1:1584766/140‑1 (MQ=255)

                                                                                atgatATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAAc                                                      <  2:584797/140‑1 (MQ=255)

                                                                                          atttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCa                                                            <  2:675858/124‑1 (MQ=255)

                                                                                          atttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCa                                                            >  1:675858/1‑124 (MQ=255)

                                                                                            ttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACt                                          >  1:89927/1‑140 (MQ=255)

                                                                                            ttatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACt                                          <  2:931678/140‑1 (MQ=255)

                                                                                             tatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAgg                                                >  1:1077299/1‑133 (MQ=255)

                                                                                             tatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAgg                                                <  2:1077299/133‑1 (MQ=255)

                                                                                             tatGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACtt                                         <  2:259014/140‑1 (MQ=255)

                                                                                              atGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAAcagcag                                                 <  2:1188083/131‑1 (MQ=255)

                                                                                              atGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAAcagcag                                                 >  1:1188083/1‑131 (MQ=255)

                                                                                              atGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTa                                        >  1:855267/1‑140 (MQ=255)

                                                                                              atGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTa                                        >  2:891861/1‑140 (MQ=255)

                                                                                               tGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAg                                       >  1:225171/1‑140 (MQ=255)

                                                                                                gACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAgg                                      >  1:650445/1‑140 (MQ=255)

                                                                                                gACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAgg                                      >  1:886672/1‑140 (MQ=255)

                                                                                                  ccTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAggg                                               <  1:121936/129‑1 (MQ=255)

                                                                                                  ccTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAggg                                               >  2:121936/1‑129 (MQ=255)

                                                                                                  ccTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGAt                                    >  2:1016800/1‑140 (MQ=255)

                                                                                                   cTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGAtt                                   <  2:650445/140‑1 (MQ=255)

                                                                                                     tGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTgg                                 >  2:1149609/1‑140 (MQ=255)

                                                                                                          ttCCCGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTc                            >  2:52172/1‑140 (MQ=255)

                                                                                                            cccGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAg                          >  2:1183617/1‑140 (MQ=255)

                                                                                                             ccGTCAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGa                         >  1:25463/1‑140 (MQ=255)

                                                                                                                 cAGGAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACaaa                     >  1:691335/1‑140 (MQ=255)

                                                                                                                   ggAAAACTAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGc                   <  2:946086/140‑1 (MQ=255)

                                                                                                                          tAGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCAtttttt            <  2:1404946/140‑1 (MQ=255)

                                                                                                                           aGCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTg           <  1:52172/140‑1 (MQ=255)

                                                                                                                            gCAACCTTAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTgg          >  1:949073/1‑140 (MQ=255)

                                                                                                                                   tAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGt         <  1:1283197/134‑1 (MQ=255)

                                                                                                                                   tAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGt         <  1:1578243/134‑1 (MQ=255)

                                                                                                                                   tAGAGTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGt         >  2:1283197/1‑134 (MQ=255)

                                                                                                                                    agagTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGaa  <  2:691335/140‑1 (MQ=255)

                                                                                                                                    agagTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGaa  >  1:1444190/1‑140 (MQ=255)

                                                                                                                                    agagTGGGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGaa  >  1:248009/1‑140 (MQ=255)

TTTACTTGGAGAAATACCAGAGACGGTTACTATGATTGGTGGAAATTTGGCCCATTCTGGTCCAGGATTTGGCAATGAAGATGATATGTTATTTATGACCTTGGAATTCCCGTCAGGAAAACTAGCAACCTTAGAGT‑GGGGGAGTGCATTTAACTGGCCGGAACATTATGTCATCATCAATGGAACTAAAGGCTCTATTAAAATTGATATGCAAGAAACAGCAGGGTCACTTAGGATTGGCGGTCAGACAAAGCATTTTTTGGTCCATGAA  >  NC_000913/4505835‑4506105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A