Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,620,752 A→G V129A (GTG→GCG)  eamA ← cysteine/O‑acetylserine exporter EamA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,620,7520AG100.0% 337.4 / NA 94V129A (GTG→GCG) eamAcysteine/O‑acetylserine exporter EamA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (45/49);  total (45/49)

CACCGCCGGACGCGTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACACCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCA  >  NC_000913/1620616‑1620887
                                                                                                                                        |                                                                                                                                       
cACCGCCGGGCGCGTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCa                                                                                                                                      >  2:1271983/1‑140 (MQ=255)
  ccgccgGACGCGTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGt                                                                                                                                    <  1:2391746/140‑1 (MQ=255)
    gccgGACGCGTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTAc                                                                                                                                  >  2:1135358/1‑140 (MQ=255)
       ggACGCGTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGcc                                                                                                                               >  2:12106/1‑140 (MQ=255)
          cgcgTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCaaa                                                                                                                            <  1:1546828/140‑1 (MQ=255)
          cgcgTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCaaa                                                                                                                            <  1:256784/140‑1 (MQ=255)
          cgcgTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCaaa                                                                                                                            <  2:370983/140‑1 (MQ=255)
           gcgTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCaaaa                                                                                                                           <  1:474464/140‑1 (MQ=255)
             gTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAAt                                                                                                                         >  1:1600792/1‑140 (MQ=255)
               tGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCg                                                                                                                       <  1:1447395/140‑1 (MQ=255)
               tGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCg                                                                                                                       >  2:1567990/1‑140 (MQ=255)
                 aGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCt                                                                                                                     <  1:1862050/140‑1 (MQ=255)
                 aGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCt                                                                                                                     <  1:797872/140‑1 (MQ=255)
                     cGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAgg                                                                                                                 >  2:1867988/1‑140 (MQ=255)
                     cGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAgg                                                                                                                 >  1:2260737/1‑140 (MQ=255)
                        cATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGa                                                                                                              >  2:1130215/1‑140 (MQ=255)
                          tGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATc                                                                                                            <  2:1261477/140‑1 (MQ=255)
                               tttttATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGc                                                                                                       <  1:1975849/140‑1 (MQ=255)
                                ttttATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGcc                                                                                                      <  2:181958/140‑1 (MQ=255)
                                  ttATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCaa                                                                                                    >  2:1390571/1‑140 (MQ=255)
                                    aTTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAAtt                                                                                                  <  1:1867988/140‑1 (MQ=255)
                                      tGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGt                                                                                                <  1:1505179/140‑1 (MQ=255)
                                       gAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGtt                                                                                               >  1:2057980/1‑140 (MQ=255)
                                       gAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGtt                                                                                               >  1:1997917/1‑140 (MQ=255)
                                        aaGATGTTTCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGttt                                                                                              >  2:410027/1‑140 (MQ=255)
                                        aaGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGttt                                                                                              >  2:133714/1‑140 (MQ=255)
                                         aGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTg                                                                                             >  1:1215139/1‑140 (MQ=255)
                                         aGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTg                                                                                             <  1:1567990/140‑1 (MQ=255)
                                          gATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGc                                                                                            <  1:1042249/140‑1 (MQ=255)
                                          gATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGc                                                                                            <  1:2282801/140‑1 (MQ=255)
                                           aTGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGcc                                                                                           <  1:133714/140‑1 (MQ=255)
                                             gTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCAt                                                                                         >  1:285747/1‑140 (MQ=255)
                                              ttGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATg                                                                                        <  1:845398/140‑1 (MQ=255)
                                                  caccCGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGt                                                                                    <  2:276719/140‑1 (MQ=255)
                                                    cacGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGt                                                                                    <  1:635059/138‑1 (MQ=255)
                                                    cacGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGt                                                                                    >  2:635059/1‑138 (MQ=255)
                                                    cacGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCg                                                                                  <  2:2057980/140‑1 (MQ=255)
                                                    cacGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCg                                                                                  <  2:1997917/140‑1 (MQ=255)
                                                     acGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGt                                                                                    >  1:2144038/1‑137 (MQ=255)
                                                     acGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGt                                                                                    <  2:2144038/137‑1 (MQ=255)
                                                     acGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGc                                                                                 >  2:1717142/1‑140 (MQ=255)
                                                     acGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGc                                                                                 <  1:1438129/140‑1 (MQ=255)
                                                     acGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGc                                                                                 >  1:2048598/1‑140 (MQ=255)
                                                      cGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCt                                                                                >  2:1061825/1‑140 (MQ=255)
                                                      cGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCt                                                                                >  1:250064/1‑140 (MQ=255)
                                                          cAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTcccc                                                                            <  1:1390571/140‑1 (MQ=255)
                                                            aCTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGa                                                                          >  2:1568580/1‑140 (MQ=255)
                                                                 aTGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTa                                                                     >  1:847546/1‑140 (MQ=255)
                                                                  tgctgcCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTaa                                                                    >  2:1038873/1‑140 (MQ=255)
                                                                       ccgccAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAAcgcg                                                               <  2:146738/140‑1 (MQ=255)
                                                                       ccgccAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAAcgcg                                                               <  1:12106/140‑1 (MQ=255)
                                                                       ccgccAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAAcgcg                                                               <  2:496430/140‑1 (MQ=255)
                                                                       ccgccAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAAcgcg                                                               >  1:365058/1‑140 (MQ=255)
                                                                       ccgccAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAAcgcg                                                               <  2:1600792/140‑1 (MQ=255)
                                                                       ccgccAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAAcgcg                                                               <  2:1985659/140‑1 (MQ=255)
                                                                            aGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAg                                                          <  2:285747/140‑1 (MQ=255)
                                                                              ggTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCa                                                        <  1:707/140‑1 (MQ=255)
                                                                              ggTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCa                                                        <  1:1009932/140‑1 (MQ=255)
                                                                               gTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCAt                                                       <  2:1215139/140‑1 (MQ=255)
                                                                                        aaGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTaaa                                              >  1:911283/1‑140 (MQ=255)
                                                                                        aaGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTaaa                                              <  1:1135358/140‑1 (MQ=255)
                                                                                         aGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTaaaa                                             <  2:250064/140‑1 (MQ=255)
                                                                                         aGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTaaaa                                             >  2:1128721/1‑140 (MQ=255)
                                                                                         aGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTaaaa                                             >  1:2325804/1‑140 (MQ=255)
                                                                                          gCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTaaaaa                                            >  1:868096/1‑140 (MQ=255)
                                                                                              aGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgc                                        >  1:939235/1‑140 (MQ=255)
                                                                                              aGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgc                                        >  1:47279/1‑140 (MQ=255)
                                                                                              aGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgc                                        >  1:280767/1‑140 (MQ=255)
                                                                                              aGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgc                                        >  1:987182/1‑140 (MQ=255)
                                                                                               gCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcc                                       >  1:1787124/1‑140 (MQ=255)
                                                                                                cATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcct                                      <  1:1568580/140‑1 (MQ=255)
                                                                                                  tCGCCACATGCTGACCGTTGAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcctgt                                    <  2:313310/140‑1 (MQ=255)
                                                                                                  tCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcctgt                                    <  2:2260737/140‑1 (MQ=255)
                                                                                                  tCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcctgt                                    <  2:365058/140‑1 (MQ=255)
                                                                                                  tCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcctgt                                    <  1:1717142/140‑1 (MQ=255)
                                                                                                  tCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcctgt                                    <  2:868096/140‑1 (MQ=255)
                                                                                                  tCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcctgt                                    <  1:1061825/140‑1 (MQ=255)
                                                                                                   cGCCACATGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACgcctgtg                                   <  1:1442934/140‑1 (MQ=255)
                                                                                                          tGCTGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTaa                            >  2:1359958/1‑140 (MQ=255)
                                                                                                             tGACCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAacac                         >  2:1961264/1‑140 (MQ=255)
                                                                                                               aCCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCa                       >  1:2021794/1‑140 (MQ=255)
                                                                                                               aCCGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCa                       >  1:246609/1‑140 (MQ=255)
                                                                                                                 cGTTCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGc                     <  2:939235/140‑1 (MQ=255)
                                                                                                                   ttCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGa                   >  1:316240/1‑140 (MQ=255)
                                                                                                                    tCAGACTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGaa                  <  2:1508615/140‑1 (MQ=255)
                                                                                                                         cTATCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAg             <  1:1130215/140‑1 (MQ=255)
                                                                                                                         cTATCTTCGATTAACGCCAGTACGCC‑AAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGt            >  1:1684641/1‑140 (MQ=255)
                                                                                                                           aTCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTc           >  1:252418/1‑140 (MQ=255)
                                                                                                                           aTCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTc           >  1:2263085/1‑140 (MQ=255)
                                                                                                                            tCTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTcc          >  2:1245926/1‑140 (MQ=255)
                                                                                                                             cTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCca         >  2:1309858/1‑140 (MQ=255)
                                                                                                                             cTTCGATTAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGCTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCca         >  2:900527/1‑140 (MQ=255)
                                                                                                                                   ttAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGc   <  2:280767/140‑1 (MQ=255)
                                                                                                                                   ttAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGc   <  1:1271983/140‑1 (MQ=255)
                                                                                                                                    tAACGCCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCa  <  1:1038873/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CACCGCCGGACGCGTTGAGTGCGACATGATCTTTTTATTGAAGATGTTGCCACACGCCCAACTAAATGCTGCCGCCAGGGTCAACATAAAGCCGAGCATCGCCACATGCTGACCGTTCAGACTATCTTCGATTAACACCAGTACGCCAAAAATCGCTAAGGCGATCCCCGCCAATTGTTTGCCATGCAGTCGCTCCCCGAAAGTAAACGCGCCAAGCATGATAGTAAAAAACGCCTGTGCCTGTAACACCAGCGAAGCCAGTCCAGCAGGCA  >  NC_000913/1620616‑1620887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A