Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,651,822 T→C pseudogene (311/1197 nt) intQ → Qin prophage; putative defective integrase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,651,8220TC100.0% 346.9 / NA 95pseudogene (311/1197 nt)intQQin prophage; putative defective integrase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/64);  total (31/64)

AAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAAC  >  NC_000913/1651686‑1651955
                                                                                                                                        |                                                                                                                                     
aaaTTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCg                                                                                                                                    <  1:984005/140‑1 (MQ=255)
    ttCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTaaa                                                                                                                                <  1:1046625/140‑1 (MQ=255)
    ttCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTaaa                                                                                                                                <  1:1458120/140‑1 (MQ=255)
    ttCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTaaa                                                                                                                                <  1:826642/140‑1 (MQ=255)
          cACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTa                                                                                                                          <  2:827245/140‑1 (MQ=255)
            cTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTact                                                                                                                        <  1:1058918/140‑1 (MQ=255)
            cTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTact                                                                                                                        <  2:1146275/140‑1 (MQ=255)
            cTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTact                                                                                                                        <  1:2019362/140‑1 (MQ=255)
              gaaagaaaCTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactga                                                                                                                      <  2:1139708/140‑1 (MQ=255)
              gaaagaaaCTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactga                                                                                                                      <  2:950899/140‑1 (MQ=255)
              gaaagaaaCTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactga                                                                                                                      <  2:1107305/140‑1 (MQ=255)
              gaaagaaaCTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactga                                                                                                                      <  2:1299089/140‑1 (MQ=255)
               aaagaaaCTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactgac                                                                                                                     <  1:399767/140‑1 (MQ=255)
                aagaaaCTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactgact                                                                                                                    <  1:586269/140‑1 (MQ=255)
                aagaaaCTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactgact                                                                                                                    <  2:2379505/140‑1 (MQ=255)
                   aaaCTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGa                                                                                                                 >  1:2390582/1‑140 (MQ=255)
                       tGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGa                                                                                                                 >  2:802045/1‑136 (MQ=255)
                       tGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGa                                                                                                                 <  1:802045/136‑1 (MQ=255)
                         aaGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAg                                                                                                           >  1:1515827/1‑140 (MQ=255)
                         aaGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAg                                                                                                           >  1:604973/1‑140 (MQ=255)
                           gTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTact                                                                                                                        <  2:1923404/125‑1 (MQ=255)
                           gTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTact                                                                                                                        >  1:1923404/1‑125 (MQ=255)
                              gCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactga                                                                                                                      <  1:1680344/124‑1 (MQ=255)
                              gCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTactga                                                                                                                      >  2:1680344/1‑124 (MQ=255)
                              gCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATccc                                                                                                      >  2:1407888/1‑140 (MQ=255)
                               ccAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATcccc                                                                                                     <  1:1407888/140‑1 (MQ=255)
                                  aaaTATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCaaa                                                                                                  <  1:33493/140‑1 (MQ=255)
                                     cATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGt                                                                                               <  1:769836/140‑1 (MQ=255)
                                     cATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGt                                                                                               <  1:2148821/140‑1 (MQ=255)
                                       tCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTaa                                                                                             <  1:2279969/140‑1 (MQ=255)
                                       tCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTaa                                                                                             <  1:2268473/140‑1 (MQ=255)
                                       tCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTaa                                                                                             <  1:1108579/140‑1 (MQ=255)
                                        cACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAAc                                                                                            <  1:275837/140‑1 (MQ=255)
                                        cACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAAc                                                                                            <  2:379638/140‑1 (MQ=255)
                                          cTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACta                                                                                          <  2:1705244/140‑1 (MQ=255)
                                          cTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACta                                                                                          <  1:1023086/140‑1 (MQ=255)
                                            cAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACtata                                                                                        <  1:961/140‑1 (MQ=255)
                                              acacATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATAtt                                                                                      <  2:2044978/140‑1 (MQ=255)
                                               cacaTACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTg                                                                                     >  2:1139459/1‑140 (MQ=255)
                                                  aTACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTa                                                                                  <  2:1174776/140‑1 (MQ=255)
                                                  aTACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTa                                                                                  >  2:2094993/1‑140 (MQ=255)
                                                  aTACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTa                                                                                  <  1:1023751/140‑1 (MQ=255)
                                                  aTACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTa                                                                                  >  1:344754/1‑140 (MQ=255)
                                                    aCCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTaca                                                                                <  1:1827399/140‑1 (MQ=255)
                                                    aCCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTaca                                                                                <  1:782584/140‑1 (MQ=255)
                                                       gTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTaa                                                                                             <  2:883472/124‑1 (MQ=255)
                                                       gTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTaa                                                                                             >  1:883472/1‑124 (MQ=255)
                                                       gTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTa                                                                                  <  2:71335/135‑1 (MQ=255)
                                                       gTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTa                                                                                  >  1:71335/1‑135 (MQ=255)
                                                        tGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACtata                                                                                        <  1:162212/128‑1 (MQ=255)
                                                        tGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACtata                                                                                        >  2:162212/1‑128 (MQ=255)
                                                        tGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAAc                                                                            >  2:83021/1‑140 (MQ=255)
                                                        tGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAAc                                                                            <  2:684074/140‑1 (MQ=255)
                                                         gCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTg                                                                                     <  1:874342/130‑1 (MQ=255)
                                                         gCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTg                                                                                     >  2:874342/1‑130 (MQ=255)
                                                         gCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAAcc                                                                           >  2:553508/1‑140 (MQ=255)
                                                         gCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAAcc                                                                           >  2:918346/1‑140 (MQ=255)
                                                         gCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAAcc                                                                           >  2:1913402/1‑140 (MQ=255)
                                                         gCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAAcc                                                                           >  1:2262775/1‑140 (MQ=255)
                                                         gCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAAcc                                                                           >  1:1549483/1‑140 (MQ=255)
                                                             tcatcaAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAggg                                                                       >  2:1853006/1‑140 (MQ=255)
                                                             tcatcaAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAggg                                                                       >  1:1620022/1‑140 (MQ=255)
                                                               atcaAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGgag                                                                     >  1:1474370/1‑140 (MQ=255)
                                                                tcaAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGgaga                                                                    <  2:1474370/140‑1 (MQ=255)
                                                                tcaAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGgaga                                                                    <  1:1913402/140‑1 (MQ=255)
                                                                tcaAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGgaga                                                                    >  2:2254712/1‑140 (MQ=255)
                                                                  aaaaaTATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATc                                                                  <  1:2094993/140‑1 (MQ=255)
                                                                  aaaaaTATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATc                                                                  <  1:2292437/140‑1 (MQ=255)
                                                                  aaaaaTATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATc                                                                  <  1:883655/140‑1 (MQ=255)
                                                                    aaaTATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCgg                                                                <  1:701643/140‑1 (MQ=255)
                                                                      atatCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGct                                                              <  2:1515827/140‑1 (MQ=255)
                                                                       tatCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGctg                                                             <  1:918346/140‑1 (MQ=255)
                                                                            tGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGctgtaact                                                        <  2:2262775/140‑1 (MQ=255)
                                                                              aGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGctgtaactgt                                                      >  1:1358376/1‑140 (MQ=255)
                                                                               gCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGctgtaactgta                                                     >  1:2061724/1‑140 (MQ=255)
                                                                                  tAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAaat                                                  >  2:56043/1‑140 (MQ=255)
                                                                                  tAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAaat                                                  <  1:1403896/140‑1 (MQ=255)
                                                                                     tCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAaat                                                  >  1:429465/1‑137 (MQ=255)
                                                                                     tCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAaat                                                  <  2:429465/137‑1 (MQ=255)
                                                                                        gTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTAc                                            >  2:2042969/1‑140 (MQ=255)
                                                                                          gAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACAt                                          >  1:173775/1‑140 (MQ=255)
                                                                                              aaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACa                                      <  2:1549483/140‑1 (MQ=255)
                                                                                              aaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACa                                      <  2:604973/140‑1 (MQ=255)
                                                                                              aaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACa                                      <  1:83021/140‑1 (MQ=255)
                                                                                              aaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACa                                      <  1:637129/140‑1 (MQ=255)
                                                                                                      gCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTaa                              <  2:1867512/140‑1 (MQ=255)
                                                                                                      gCCTCATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTaa                              <  1:126776/140‑1 (MQ=255)
                                                                                                          cATCGATTAATAAAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGcc                          <  1:1069412/140‑1 (MQ=255)
                                                                                                                    taaAGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGt                <  1:842223/140‑1 (MQ=255)
                                                                                                                      aaGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGttt              <  1:1139459/140‑1 (MQ=255)
                                                                                                                      aaGAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGttt              >  1:580842/1‑140 (MQ=255)
                                                                                                                        gAAAAATTACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTgg            <  1:553508/140‑1 (MQ=255)
                                                                                                                              ttACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGa      <  2:1358376/140‑1 (MQ=255)
                                                                                                                              ttACTGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGa      <  2:580842/140‑1 (MQ=255)
                                                                                                                                  tGGAGGCTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAAc  <  2:2218290/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
AAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTACTGACTGGATACCAGATCCCCAAAAGTAACTATATTGTTACACAACCAGGGAGATCGGCTGTAACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAAC  >  NC_000913/1651686‑1651955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A