Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,718,598	G→A	A335A (GCC→GCT)	anmK ←	anhydro‑N‑acetylmuramic acid kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,718,598	0	G	A	100.0%	359.7 / NA	102	A335A (GCC→GCT)	anmK	anhydro‑N‑acetylmuramic acid kinase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (47/55); total (47/55)

Only 100 of 104 total aligned reads displayed.

GCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAGGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTCCACCACATACCATCAA  >  NC_000913/1718463‑1718732

       gAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCaa                                                                                                                             <  1:534685/140‑1 (MQ=255)

       gAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCaa                                                                                                                             <  2:88233/140‑1 (MQ=255)

        aaaaaTTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAAt                                                                                                                            <  1:1224132/140‑1 (MQ=255)

        aaaaaTTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAAt                                                                                                                            <  2:43021/140‑1 (MQ=255)

        aaaaaTTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAAt                                                                                                                            <  2:779421/140‑1 (MQ=255)

        aaaaaTTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAAt                                                                                                                            <  2:715325/140‑1 (MQ=255)

            aTTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCtt                                                                                                                        >  1:1821512/1‑140 (MQ=255)

              tCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTcc                                                                                                                      <  1:791571/140‑1 (MQ=255)

                  ttAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCa                                                                                                                              >  2:1944591/1‑128 (MQ=255)

                  ttAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCa                                                                                                                              <  1:1944591/128‑1 (MQ=255)

                  ttAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGt                                                                                                                  >  1:1097920/1‑140 (MQ=255)

                     aCTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCAt                                                                                                               <  1:1608948/140‑1 (MQ=255)

                          gATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGAGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCa                                                                                                          >  1:537921/1‑140 (MQ=255)

                           atatCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCAc                                                                                                         >  2:603662/1‑140 (MQ=255)

                            tatCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACt                                                                                                        >  2:347917/1‑140 (MQ=255)

                                aCGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACt                                                                                                        <  2:967038/136‑1 (MQ=255)

                                 cGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAAt                                                                                                     >  2:481554/1‑138 (MQ=255)

                                 cGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAAt                                                                                                     <  1:481554/138‑1 (MQ=255)

                                 cGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGc                                                                                                   >  1:1951416/1‑140 (MQ=255)

                                 cGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGc                                                                                                   >  2:1679426/1‑140 (MQ=255)

                                     ttAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGCCGGAAGCCAGATTTCCTGGTAACCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATc                                                                                                              <  1:327358/125‑1 (MQ=255)

                                     ttAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATc                                                                                                              >  2:327358/1‑125 (MQ=255)

                                     ttAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAAc                                                                                               >  1:1554709/1‑140 (MQ=255)

                                     ttAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAAc                                                                                               <  1:1422138/140‑1 (MQ=255)

                                     ttAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAAc                                                                                               >  1:1170692/1‑140 (MQ=255)

                                     ttAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAAc                                                                                               >  1:449080/1‑140 (MQ=255)

                                       aGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACgg                                                                                             >  1:2070215/1‑140 (MQ=255)

                                       aGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACgg                                                                                             >  1:2315814/1‑140 (MQ=255)

                                       aGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACgg                                                                                             >  2:942618/1‑140 (MQ=255)

                                        gCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGc                                                                                            <  2:567782/140‑1 (MQ=255)

                                         cGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGc                                                                                                            >  2:959856/1‑123 (MQ=255)

                                         cGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGc                                                                                                            <  1:959856/123‑1 (MQ=255)

                                         cGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCa                                                                                           >  1:1356238/1‑140 (MQ=255)

                                         cGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCa                                                                                           >  1:1167808/1‑140 (MQ=255)

                                          ggggAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCAt                                                                                          <  2:1097920/140‑1 (MQ=255)

                                            ggAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCg                                                                                        <  2:1356238/140‑1 (MQ=255)

                                            ggAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCg                                                                                        <  2:1167808/140‑1 (MQ=255)

                                                    ccccccAGTACCGTCTCCTGGCTTGCCCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCggtggtggt                                                                                <  2:80398/139‑1 (MQ=255)

                                                     cccccAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGgtggtggtg                                                                               <  2:2140005/140‑1 (MQ=255)

                                                     cccccAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGgtggtggtg                                                                               <  1:942618/140‑1 (MQ=255)

                                                      ccccAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCggtggtggt                                                                                >  2:221302/1‑138 (MQ=255)

                                                      ccccAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCggtggtggt                                                                                <  1:221302/138‑1 (MQ=255)

                                                          aGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCAt                                                                                          >  1:335902/1‑124 (MQ=255)

                                                          aGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCAt                                                                                          <  2:335902/124‑1 (MQ=255)

                                                            tACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCtg                                                                        >  2:1972586/1‑140 (MQ=255)

                                                            tACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCtg                                                                        <  2:1013068/140‑1 (MQ=255)

                                                               cGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGc                                                                     >  1:233623/1‑140 (MQ=255)

                                                                 tctcCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCt                                                                   <  2:233623/140‑1 (MQ=255)

                                                                 tctcCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCt                                                                   >  2:521552/1‑140 (MQ=255)

                                                                   tcCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTgg                                                                 >  1:601986/1‑140 (MQ=255)

                                                                     cgggCTTGCGCCAGTGACGGAAGGCACATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCa                                                               <  1:1478918/138‑1 (MQ=255)

                                                                      tGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAg                                                              >  2:555987/1‑140 (MQ=255)

                                                                      tGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAg                                                              >  1:1173845/1‑140 (MQ=255)

                                                                      tGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAg                                                              >  1:1523088/1‑140 (MQ=255)

                                                                       ggCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGt                                                             >  1:2067758/1‑140 (MQ=255)

                                                                         cTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTaa                                                           >  2:360923/1‑140 (MQ=255)

                                                                          ttGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAAt                                                          <  1:521552/140‑1 (MQ=255)

                                                                           tGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATg                                                         >  2:624287/1‑140 (MQ=255)

                                                                            gcgcCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATgc                                                        >  1:827638/1‑140 (MQ=255)

                                                                            gcgcCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATgc                                                        >  2:616929/1‑140 (MQ=255)

                                                                             cgcCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATgcc                                                       >  1:2378257/1‑140 (MQ=255)

                                                                             cgcCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATgcc                                                       >  2:1351361/1‑140 (MQ=255)

                                                                               ccAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATgccgc                                                     >  2:1370/1‑140 (MQ=255)

                                                                                  gTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAg                                                  >  1:2386292/1‑140 (MQ=255)

                                                                                   tGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGa                                                 <  2:1523088/140‑1 (MQ=255)

                                                                                   tGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGa                                                 <  1:1731869/140‑1 (MQ=255)

                                                                                    gaggaaaGGCGGTTTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGAc                                                <  2:2378257/135‑1 (MQ=255)

                                                                                    gACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGAc                                                <  2:1747259/140‑1 (MQ=255)

                                                                                      gggAAGGCAGTTTTCCTGGTAACCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGAcgc                                              <  2:1821512/139‑1 (MQ=255)

                                                                                           ggCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCAt                                         <  2:1550699/140‑1 (MQ=255)

                                                                                                aTTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTa                                    >  2:340222/1‑140 (MQ=255)

                                                                                                      tGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGAt                              <  1:760445/140‑1 (MQ=255)

                                                                                                          aaTCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACg                          >  1:2016329/1‑140 (MQ=255)

                                                                                                          aaTCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACg                          <  2:449080/140‑1 (MQ=255)

                                                                                                          aaTCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACg                          >  2:1210103/1‑140 (MQ=255)

                                                                                                          aaTCCCGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACg                          >  1:832605/1‑140 (MQ=255)

                                                                                                            ccccGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGAc                        <  2:117714/139‑1 (MQ=255)

                                                                                                             cccGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACt                       <  2:2070215/140‑1 (MQ=255)

                                                                                                             cccGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACt                       <  1:1289799/140‑1 (MQ=255)

                                                                                                               tgCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTAc                     >  2:1968348/2‑140 (MQ=255)

                                                                                                               tgCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTAc                     <  1:1968348/139‑1 (MQ=255)

                                                                                                               cGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTAc                     <  2:537921/140‑1 (MQ=255)

                                                                                                               cGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTAc                     <  1:360923/140‑1 (MQ=255)

                                                                                                               cGCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTAc                     <  1:624287/140‑1 (MQ=255)

                                                                                                                gCCAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTAcc                    >  1:1124772/1‑140 (MQ=255)

                                                                                                                 ccAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCt                   <  1:1972586/140‑1 (MQ=255)

                                                                                                                 ccAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCt                   <  2:1854939/140‑1 (MQ=255)

                                                                                                                 ccAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCt                   <  2:1775697/140‑1 (MQ=255)

                                                                                                                  cAGCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTc                  <  2:2101632/140‑1 (MQ=255)

                                                                                                                    gCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTcca                <  2:2067758/140‑1 (MQ=255)

                                                                                                                    gCGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTcca                <  1:1351361/140‑1 (MQ=255)

                                                                                                                     cGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTccac               <  1:347917/140‑1 (MQ=255)

                                                                                                                     cGTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTccac               <  2:1170692/140‑1 (MQ=255)

                                                                                                                      gTCCGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTccacc              >  1:279841/1‑140 (MQ=255)

                                                                                                                        ccGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTCcaccac            <  1:1370/140‑1 (MQ=255)

                                                                                                                         cGCCAGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTCCACcaca           <  2:2016329/140‑1 (MQ=255)

                                                                                                                             aGGCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTCCACCACATAcc       <  1:340222/140‑1 (MQ=255)

                                                                                                                               gCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTCCACCACATACCAt     >  1:1943473/1‑140 (MQ=255)

                                                                                                                               gCAAGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTCCACCACATACCAt     <  2:1554709/140‑1 (MQ=255)

                                                                                                                                  aGCCAAGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTCCACCACATACCATCaa  <  1:2236091/140‑1 (MQ=255)

GCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAATAGCCCCCAGTACCGTCTCCTGGCTTGCGCCAGTGACGGAAGGCAGATTTCCTGGTAATCCCGCCAGCGTCCGCCAGGCAAGCCAGGCGAAAGCCAATGCTTCCATGTCATCGCCACTAATGCCAACGGCATCGGTGGTGGTGACTTCTGTGCCTGGCAGTAATGCCGCCAGACGCGCCATGAGTAGCGGATTACGACTACCTCCACCACATACCATCAA  >  NC_000913/1718463‑1718732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A