Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,788,844	T→C	V137A (GTC→GCC)	aroH →	3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,788,844	0	T	C	100.0%	348.4 / NA	99	V137A (GTC→GCC)	aroH	3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (48/51); total (48/51)

Only 100 of 105 total aligned reads displayed.

ACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTA  >  NC_000913/1788708‑1788980

aCCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGcccc                                                                                                                                       >  2:2314615/1‑140 (MQ=255)

aCCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGcccc                                                                                                                                       >  2:1775346/1‑140 (MQ=255)

   tATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAAc                                                                                                                                    <  2:1535725/140‑1 (MQ=255)

       ttGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACcgcg                                                                                                                                >  2:333914/1‑140 (MQ=255)

        tGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGa                                                                                                                               >  2:249905/1‑140 (MQ=255)

          aaaaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGAcc                                                                                                                             >  2:1414704/1‑140 (MQ=255)

           aaaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATTCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCg                                                                                                                            <  1:465952/140‑1 (MQ=255)

           aaaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCg                                                                                                                            <  2:502405/140‑1 (MQ=255)

            aaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAAc                                                                                                                                    >  2:2302354/1‑131 (MQ=255)

            aaaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAAc                                                                                                                                    <  1:2302354/131‑1 (MQ=255)

             aaCCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAg                                                                                                                          <  1:297816/140‑1 (MQ=255)

               ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGtt                                                                                                                        <  2:1095871/140‑1 (MQ=255)

               ccACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGtt                                                                                                                        <  2:1550408/140‑1 (MQ=255)

                 aCGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTcc                                                                                                                      <  2:55735/140‑1 (MQ=255)

                  cGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCt                                                                                                                     >  2:1851969/1‑140 (MQ=255)

                  cGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCt                                                                                                                     >  2:1885609/1‑140 (MQ=255)

                   gAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTc                                                                                                                    <  1:132763/140‑1 (MQ=255)

                      cTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGat                                                                                                                 <  2:582518/140‑1 (MQ=255)

                        gttgtCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGatat                                                                                                               <  1:2314615/140‑1 (MQ=255)

                          tgtCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATgg                                                                                                             >  2:1266439/1‑140 (MQ=255)

                             cGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGa                                                                                                          <  2:1588911/140‑1 (MQ=255)

                             cGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGa                                                                                                          <  1:1851969/140‑1 (MQ=255)

                             cGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGa                                                                                                          <  1:1885609/140‑1 (MQ=255)

                                 tGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCgg                                                                                                      >  2:2294015/1‑140 (MQ=255)

                                 tGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCgg                                                                                                      >  2:1806212/1‑140 (MQ=255)

                                  ggAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTATTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                     <  1:841328/140‑1 (MQ=255)

                                  ggAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                     <  2:798805/140‑1 (MQ=255)

                                  ggAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                     <  1:1283213/140‑1 (MQ=255)

                                  ggAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                     <  1:305219/140‑1 (MQ=255)

                                  ggAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                     <  1:250005/140‑1 (MQ=255)

                                   gAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCGCAACCGCGACCGAGTTCCTCGATATGGTGACCGGt                                                                                                     <  1:1332550/139‑1 (MQ=255)

                                        gACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGttt                                                                                               <  1:249905/140‑1 (MQ=255)

                                             aTCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGc                                                                                          >  2:699980/1‑140 (MQ=255)

                                             aTCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGc                                                                                          >  1:1836484/1‑140 (MQ=255)

                                              tctcCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCt                                                                                         >  1:1147294/1‑140 (MQ=255)

                                               ctcCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTg                                                                                        >  1:170722/1‑140 (MQ=255)

                                                  cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGAtt                                                                                     >  1:555460/1‑140 (MQ=255)

                                                  cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGAtt                                                                                     <  1:1752367/140‑1 (MQ=255)

                                                  cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGAtt                                                                                     >  1:2204724/1‑140 (MQ=255)

                                                  cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGAtt                                                                                     >  2:1867736/1‑140 (MQ=255)

                                                  cGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTGATTGCTGAtt                                                                                     >  1:2244886/1‑140 (MQ=255)

                                                  cGACCCAGATTTAAACGGCAGCTAGCGGGTAAACCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACTGGTAAATGAGCTGGACGACCCAATCGCCACCGAGTTCCACGATATGGTGACCGGTCAGCTTATTGCTGAtt                                                                                     >  2:510782/1‑140 (MQ=255)

                                                    aTCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTa                                                                                   <  1:1996643/140‑1 (MQ=255)

                                                     tCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTaa                                                                                  >  2:663166/1‑140 (MQ=255)

                                                     tCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTaa                                                                                  >  2:282997/1‑140 (MQ=255)

                                                      ccAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                                 <  2:1147294/140‑1 (MQ=255)

                                                      ccAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAAt                                                                                 <  1:699980/140‑1 (MQ=255)

                                                         gATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAg                                                                              <  1:2294015/140‑1 (MQ=255)

                                                          aTTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGt                                                                             >  1:1979691/1‑140 (MQ=255)

                                                          aTTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGt                                                                             >  1:2068340/1‑140 (MQ=255)

                                                               aaCGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTgggg                                                                        <  1:663166/140‑1 (MQ=255)

                                                               aaCGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTgggg                                                                        >  1:1495442/1‑140 (MQ=255)

                                                               aaCGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTgggg                                                                        <  1:1867736/140‑1 (MQ=255)

                                                               aaCGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTgggg                                                                        >  2:2229512/1‑140 (MQ=255)

                                                                    cAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGGGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGa                                                                   >  1:912917/1‑140 (MQ=255)

                                                                    cAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGa                                                                   >  1:1040892/1‑140 (MQ=255)

                                                                    cAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGa                                                                   >  2:1009739/1‑140 (MQ=255)

                                                                                 aaTCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGAt                                                                  <  1:1906881/128‑1 (MQ=255)

                                                                                 aaTCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGAt                                                                  >  2:1906881/1‑128 (MQ=255)

                                                                                 aaTCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGtac                                                      >  1:316519/1‑140 (MQ=255)

                                                                                  aTCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGtact                                                     >  1:351220/1‑140 (MQ=255)

                                                                                    cACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGtactac                                                   <  1:1900866/140‑1 (MQ=255)

                                                                                    cACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGtactac                                                   >  1:57868/1‑140 (MQ=255)

                                                                                    cACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCACCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGtactac                                                   <  1:2229512/140‑1 (MQ=255)

                                                                                     aCGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTAcc                                                  <  2:351220/140‑1 (MQ=255)

                                                                                      cGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCg                                                 <  2:2204724/140‑1 (MQ=255)

                                                                                       ggTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGa                                                <  2:1728739/140‑1 (MQ=255)

                                                                                       ggTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGa                                                >  2:2078971/1‑140 (MQ=255)

                                                                                            ggAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTc                                           >  2:1867868/1‑140 (MQ=255)

                                                                                            ggAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTc                                           >  1:1075937/1‑140 (MQ=255)

                                                                                              aGCTGGCGCGCAAATTACCTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAg                                         >  2:416035/1‑140 (MQ=255)

                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGa                                                <  1:2056285/128‑1 (MQ=255)

                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGa                                                >  2:2056285/1‑128 (MQ=255)

                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCa                                    >  2:245681/1‑140 (MQ=255)

                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCa                                    >  1:466311/1‑140 (MQ=255)

                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCa                                    >  1:2113598/1‑140 (MQ=255)

                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCa                                    <  1:282997/140‑1 (MQ=255)

                                                                                                   gcgcgcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCa                                    >  2:592113/1‑140 (MQ=255)

                                                                                                       gcAAATTACTTTTACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACcgc                                >  1:1316048/1‑140 (MQ=255)

                                                                                                                 tttACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCtt                      <  2:2068340/140‑1 (MQ=255)

                                                                                                                 tttACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCtt                      <  1:1775346/140‑1 (MQ=255)

                                                                                                                 tttACAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTACTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCtt                      <  2:2231141/140‑1 (MQ=255)

                                                                                                                     cAGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGc                  <  1:1126220/140‑1 (MQ=255)

                                                                                                                     cAGGTAAATGAGATGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGc                  >  2:1494553/1‑140 (MQ=255)

                                                                                                                      aGGTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCa                 <  1:13039/140‑1 (MQ=255)

                                                                                                                       ggTAAATGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCAc                >  1:1591138/1‑140 (MQ=255)

                                                                                                                            aTGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACtctc            >  2:763404/1‑139 (MQ=255)

                                                                                                                            aTGAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACtctc            <  1:763404/139‑1 (MQ=255)

                                                                                                                              gAGCTGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTg         <  2:1269905/140‑1 (MQ=255)

                                                                                                                                  tGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCg     >  1:594281/1‑140 (MQ=255)

                                                                                                                                  tGGGCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCg     >  2:589338/1‑140 (MQ=255)

                                                                                                                                   gggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCgg    <  1:1266439/140‑1 (MQ=255)

                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCa                 >  2:1106766/1‑126 (MQ=255)

                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCa                 <  1:1106766/126‑1 (MQ=255)

                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGt   <  2:466311/140‑1 (MQ=255)

                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGt   >  2:1910228/1‑140 (MQ=255)

                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGt   >  1:345536/1‑140 (MQ=255)

                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGt   <  1:510782/140‑1 (MQ=255)

                                                                                                                                    ggCGCCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGt   <  1:589338/140‑1 (MQ=255)

                                                                                                                                     gcgcCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTa  <  1:1494553/140‑1 (MQ=255)

ACCTATTTTGAAAAACCACGAACTGTTGTCGGCTGGAAAGGACTAATCTCCGATCCAGATTTAAACGGCAGCTATCGGGTAAATCACGGTCTGGAGCTGGCGCGCAAATTACTTTTACAGGTAAATGAGCTGGGCGTCCCAACCGCGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTA  >  NC_000913/1788708‑1788980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A